To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("INSPEcT")

In most cases, you don't need to download the package archive at all.

INSPEcT

DOI: 10.18129/B9.bioc.INSPEcT    

This is the development version of INSPEcT; for the stable release version, see INSPEcT.

Analysis of 4sU-seq and RNA-seq time-course data

Bioconductor version: Development (3.7)

INSPEcT (INference of Synthesis, Processing and dEgradation rates in Time-Course experiments) analyses 4sU-seq and RNA-seq time-course data in order to evaluate synthesis, processing and degradation rates and asses via modeling the rates that determines changes in mature mRNA levels.

Author: Stefano de Pretis

Maintainer: Stefano de Pretis <ste.depo at gmail.com>

Citation (from within R, enter citation("INSPEcT")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("INSPEcT")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("INSPEcT")

 

PDF R Script INSPEcT
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneRegulation, RNASeq, Sequencing, Software, SystemsBiology, TimeCourse
Version 1.9.0
In Bioconductor since BioC 3.2 (R-3.2) (2 years)
License GPL-2
Depends R (>= 3.2), methods, Biobase, BiocParallel
Imports pROC, deSolve, rootSolve, compiler, preprocessCore, GenomicFeatures, GenomicRanges, IRanges, BiocGenerics, GenomicAlignments, Rsamtools, S4Vectors
LinkingTo
Suggests BiocStyle, knitr, TxDb.Mmusculus.UCSC.mm9.knownGene
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package INSPEcT_1.9.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) INSPEcT_1.9.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/INSPEcT
Package Short Url http://bioconductor.org/packages/INSPEcT/
Package Downloads Report Download Stats

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