apeglm
This is the released version of apeglm; for the devel version, see apeglm.
All Bioconductor versions of apeglm
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6
Approximate posterior estimation for GLM coefficients
Bioconductor version: 3.23 · Package version: 1.34.0
apeglm provides Bayesian shrinkage estimators for effect sizes for a variety of GLM models, using approximation of the posterior for individual coefficients.
Author: Anqi Zhu [aut, cre], Joshua Zitovsky [ctb], Joseph Ibrahim [aut], Michael Love [aut]
Maintainer: Anqi Zhu <anqizhu at live.unc.edu>
Citation
From within R, enter citation("apeglm"):
Anqi Zhu, Joseph Ibrahim, Michael Love. apeglm: Approximate posterior estimation for GLM coefficients. doi:10.18129/B9.bioc.apeglm, R package version 1.34.0, https://bioconductor.org/packages/apeglm.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("apeglm")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.34.0 |
| License | GPL-2 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.6 (R-3.4) (8 years) |
| Downloads rank | 92 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Bayesian, DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/apeglm/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("apeglm")| Effect size estimation with apeglm | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | apeglm_1.34.0.tar.gz |
| Windows binary (x86_64) | apeglm_1.34.0.zip |
| macOS binary (arm64) | apeglm_1.34.0.tgz |
| macOS binary (x86_64) | apeglm_1.34.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/apeglm |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/apeglm |
| Package Downloads Report | Download Stats |
Dependencies
Imports: emdbook, SummarizedExperiment, GenomicRanges, methods, stats, utils, Rcpp
LinkingTo: Rcpp, RcppEigen, RcppNumerical
Reverse dependencies
Depends On Me (1): rnaseqGene
Imports Me (7): airpart, debrowser, DiffBind, ERSSA, phantasus, Rmmquant, TEKRABber
Suggests Me (9): bambu, dar, DeeDeeExperiment, DESeq2, extraChIPs, fishpond, NanoporeRNASeq, RNAseqQC, terapadog