RTNduals

This is the released version of RTNduals; for the devel version, see RTNduals.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5

Analysis of co-regulation and inference of 'dual regulons'

Bioconductor version: Release (3.23)

RTNduals identifies co-regulatory loops between pairs of regulons inferred by the RTN package by evaluating their shared target genes. It infers dual regulons and tests whether regulator pairs exhibit cooperative or competitive influences on common targets.

Author: Vinicius S. Chagas, Clarice S. Groeneveld, Gordon Robertson, Kerstin B. Meyer, Mauro A. A. Castro

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>, Clarice Groeneveld <clari.groeneveld at gmail.com>

Citation (from within R, enter citation("RTNduals")):

Vinicius S. Chagas, Clarice S. Groeneveld, Gordon Robertson, Kerstin B. Meyer, Mauro A. A. Castro. RTNduals: Analysis of co-regulation and inference of 'dual regulons'. doi:10.18129/B9.bioc.RTNduals, R package version 1.36.0, https://bioconductor.org/packages/RTNduals.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RTNduals")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTNduals")

"RTNduals: analysis of co-regulation and inference of dual regulons."	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GeneExpression, GeneRegulation, GraphAndNetwork, NetworkEnrichment, NetworkInference, Software
Version	1.36.0
In Bioconductor since	BioC 3.5 (R-3.4) (9.5 years)
License	Artistic-2.0
Depends	R (>= 4.4.0), RTN (>= 2.32), methods
Imports	graphics, grDevices, stats, utils
System Requirements
URL

Suggests	knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me	RTNsurvival
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RTNduals_1.36.0.tar.gz
Windows Binary (x86_64)	RTNduals_1.36.0.zip
macOS Binary (big-sur-x86_64)	RTNduals_1.36.0.tgz
macOS Binary (sonoma-arm64)	RTNduals_1.36.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RTNduals
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RTNduals
Package Short Url	https://bioconductor.org/packages/RTNduals/
Package Downloads Report	Download Stats