MSstatsQC

This is the released version of MSstatsQC; for the devel version, see MSstatsQC.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

Longitudinal system suitability monitoring and quality control for proteomic experiments

Bioconductor version: Release (3.23)

MSstatsQC is an R package which provides longitudinal system suitability monitoring and quality control tools for proteomic experiments.

Author: Eralp Dogu [aut, cre] ORCID: 0000-0002-8256-7304 , Sara Taheri [aut] ORCID: 0000-0002-6554-9083 , Olga Vitek [aut] ORCID: 0000-0003-1728-1104

Maintainer: Eralp Dogu <eralp.dogu at gmail.com>

Citation (from within R, enter citation("MSstatsQC")):

Eralp Dogu, Sara Taheri, Olga Vitek. MSstatsQC: Longitudinal system suitability monitoring and quality control for proteomic experiments. doi:10.18129/B9.bioc.MSstatsQC, R package version 2.30.0, https://bioconductor.org/packages/MSstatsQC.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MSstatsQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstatsQC")

Longitudinal System Suitability Monitoring and Quality Control with MSstatsQC	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	MassSpectrometry, Normalization, Proteomics, QualityControl, Software
Version	2.30.0
In Bioconductor since	BioC 3.6 (R-3.4) (9 years)
License	Artistic License 2.0
Depends	R (>= 3.5.0)
Imports	dplyr, plyr, plotly, ggplot2, ggExtra, stats, grid, MSnbase, qcmetrics, h2o, FrF2, car, reshape2, jsonlite
System Requirements
URL	http://msstats.org/msstatsqc
Bug Reports	https://groups.google.com/forum/#!forum/msstatsqc

Suggests	knitr, rmarkdown, testthat, RforProteomics
Linking To
Enhances
Depends On Me
Imports Me	MSstatsQCgui
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MSstatsQC_2.30.0.tar.gz
Windows Binary (x86_64)	MSstatsQC_2.30.0.zip
macOS Binary (big-sur-x86_64)	MSstatsQC_2.30.0.tgz
macOS Binary (sonoma-arm64)	MSstatsQC_2.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MSstatsQC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MSstatsQC
Package Short Url	https://bioconductor.org/packages/MSstatsQC/
Package Downloads Report	Download Stats