JASPAR2016

This is the released version of JASPAR2016; for the devel version, see JASPAR2016.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Data package for JASPAR 2016

Bioconductor version: Release (3.23)

Data package for JASPAR 2016. To search this databases, please use the package TFBSTools (>= 1.8.1).

Author: Ge Tan <ge_tan at live.com>

Maintainer: Ge Tan <ge_tan at live.com>

Citation (from within R, enter citation("JASPAR2016")):

Ge Tan. JASPAR2016: Data package for JASPAR 2016. doi:10.18129/B9.bioc.JASPAR2016, R package version 1.40.0, https://bioconductor.org/packages/JASPAR2016.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("JASPAR2016")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, GeneRegulation, MotifAnnotation
Version	1.40.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	GPL-2
Depends	R (>= 3.2.2), methods
Imports
System Requirements
URL	http://jaspar.genereg.net/

Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	CAGEWorkflow, chromVAR, TFBSTools
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	JASPAR2016_1.40.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/JASPAR2016
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/JASPAR2016
Package Short Url	https://bioconductor.org/packages/JASPAR2016/
Package Downloads Report	Download Stats