HarmanData
Data for the Harman package
Bioconductor version: 3.23 · Package version: 1.40.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Datasets of accompany Harman, a PCA and constrained optimisation based technique. Contains three example datasets: IMR90, Human lung fibroblast cells exposed to nitric oxide; NPM, an experiment to test skin penetration of metal oxide nanoparticles following topical application of sunscreens in non-pregnant mice; OLF; an experiment to gauge the response of human olfactory neurosphere-derived (hONS) cells to ZnO nanoparticles. Since version 1.24, this package also contains the Infinium5 dataset, a set of batch correction adjustments across 5 Illumina Infinium Methylation BeadChip datasets. This file does not contain methylation data, but summary statistics of 5 datasets after correction. There is also an EpiSCOPE_sample file as exampling for the new methylation clustering functionality in Harman.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HarmanData")Details
| Maintainer | Jason Ross <jason.ross@csiro.au> |
| Author | Yalchin Oytam [aut], Josh Bowden [aut], Jason Ross [aut, cre] |
| License | GPL-3 |
| URL | http://www.bioinformatics.csiro.au/harman/ |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentData, ExpressionData, Homo_sapiens_Data, MicroarrayData, Mus_musculus_Data |
| Package Short Url | https://bioconductor.org/packages/HarmanData/ |
Citation
From within R, enter citation("HarmanData"):
Yalchin Oytam, Josh Bowden, Jason Ross. HarmanData: Data for the Harman package. doi:10.18129/B9.bioc.HarmanData, R package version 1.40.0, https://bioconductor.org/packages/HarmanData.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | HarmanData_1.40.0.tar.gz |
Dependencies
Depends: R (>= 3.5.0)
Suggests: BiocGenerics, BiocStyle, knitr, rmarkdown, Harman (>= 1.23.3)
Reverse dependencies
Suggests Me (1): Harman