CONFESS

This is the released version of CONFESS; for the devel version, see CONFESS.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Cell OrderiNg by FluorEScence Signal

Bioconductor version: Release (3.23)

Single Cell Fluidigm Spot Detector.

Author: Diana LOW and Efthimios MOTAKIS

Maintainer: Diana LOW <lowdiana at gmail.com>

Citation (from within R, enter citation("CONFESS")):

Diana LOW and Efthimios MOTAKIS. CONFESS: Cell OrderiNg by FluorEScence Signal. doi:10.18129/B9.bioc.CONFESS, R package version 1.40.0, https://bioconductor.org/packages/CONFESS.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CONFESS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CONFESS")

CONFESS	PDF	R Script
CONFESS	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CellBiology, Classification, Clustering, DataImport, GeneExpression, ImmunoOncology, QualityControl, RNASeq, Regression, Software, TimeCourse, Visualization
Version	1.40.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	GPL-2
Depends	R (>= 3.3), grDevices, utils, stats, graphics
Imports	methods, changepoint, cluster, contrast, data.table (>= 1.9.7), ecp, EBImage, flexmix, flowCore, flowClust, flowMeans, flowMerge, flowPeaks, foreach, ggplot2, grid, limma, MASS, moments, outliers, parallel, plotrix, raster, readbitmap, reshape2, SamSPECTRAL, waveslim, wavethresh, zoo
System Requirements
URL

Suggests	BiocStyle, knitr, rmarkdown, CONFESSdata
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CONFESS_1.40.0.tar.gz
Windows Binary (x86_64)	CONFESS_1.40.0.zip
macOS Binary (big-sur-x86_64)	CONFESS_1.40.0.tgz
macOS Binary (sonoma-arm64)	CONFESS_1.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CONFESS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CONFESS
Package Short Url	https://bioconductor.org/packages/CONFESS/
Package Downloads Report	Download Stats