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Evomics2012
Český Krumlov, Czech Republic
2012-01-08 ~ 2012-01-21
Instructors
- Martin Morgan
- Marc Carlson
Description
Bioconductor courses as part of the 2012 Workshop on Genomics (Evomics).
Materials
Install the course package from R-2.14.1 as follows:
source("http://bioconductor.org/scratch-repos/pkgInstall.R")
pkgInstall("Evomics2012")
Bioconductor Release »
Packages in the stable, semi-annual release:
- Software
- Annotation Data (Genome, Array, etc.)
- Experiment Data
- Latest Release Announcement
Bioconductor is also available as an Amazon Machine Image and a series of Docker images.
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
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