Advanced R for Bioinformatics

Package installation

Instructions for installing packages used in the course

Course code chunks

Code chunks from course handouts.

Programming with R (pdf)

Overview of the R programming language

Authoring R packages (pdf)

Structure and creation of R packages

Lattice graphics: an introduction (pdf)

Lab: Lattice graphics: an introduction (pdf)

Object-oriented programming (pdf)

S4 classes and methods (pdf)

Interfaces to C (and other languages) (pdf)

Interfaces to C (Lab)

Database interactions (pdf)