Package	Download_score
a4	204
a4Base	208
a4Classif	189
a4Core	226
a4Preproc	217
a4Reporting	191
ABAEnrichment	54
ABarray	199
abseqR	165
ABSSeq	234
acde	198
ACE	184
aCGH	269
ACME	262
ADaCGH2	198
ADAM	192
ADAMgui	158
ADAPT	62
adaptest	19
adductomicsR	154
ADImpute	172
adSplit	190
adverSCarial	116
AffiXcan	169
affxparser	1710
affy	7863
affycomp	237
AffyCompatible	92
affyContam	193
affycoretools	442
AffyExpress	60
affyILM	175
affyio	8028
affylmGUI	228
affyPara	60
affypdnn	79
affyPLM	973
affyQCReport	63
AffyRNADegradation	181
AffyTiling	40
AGDEX	180
aggregateBioVar	171
Agi4x44PreProcess	33
agilp	180
AgiMicroRna	275
AHMassBank	119
AIMS	384
airpart	146
alabaster	129
alabaster.base	3895
alabaster.bumpy	128
alabaster.files	114
alabaster.mae	134
alabaster.matrix	3733
alabaster.ranges	3618
alabaster.sce	1202
alabaster.schemas	3532
alabaster.se	3587
alabaster.sfe	45
alabaster.spatial	133
alabaster.string	127
alabaster.vcf	124
ALDEx2	1324
alevinQC	174
AllelicImbalance	196
AlphaBeta	169
AlphaMissenseR	137
alpine	46
ALPS	20
AlpsNMR	191
alsace	60
altcdfenvs	199
AMARETTO	214
AMOUNTAIN	181
amplican	184
ampliQueso	45
AnalysisPageServer	42
anamiR	20
Anaquin	150
ANCOMBC	1410
AneuFinder	170
ANF	154
animalcules	240
annaffy	332
AnnBuilder	9
annmap	187
annotate	17162
AnnotationDbi	37646
AnnotationFilter	10618
AnnotationForge	1840
AnnotationFuncs	47
AnnotationHub	11384
AnnotationHubData	346
annotationTools	200
annotatr	551
anota	194
anota2seq	193
antiProfiles	166
AnVIL	559
AnVILAz	108
AnVILBase	344
AnVILBilling	136
AnVILGCP	119
AnVILPublish	130
AnVILWorkflow	122
APAlyzer	178
apComplex	192
apeglm	4107
APL	171
applera	3
appreci8R	160
aroma.light	1734
ArrayExpress	444
ArrayExpressHTS	50
arrayMagic	15
arrayMvout	171
arrayQCplot	6
arrayQuality	295
arrayQualityMetrics	500
ArrayTools	58
ArrayTV	51
ARRmNormalization	172
artMS	193
ASAFE	138
ASEB	158
ASGSCA	172
ASICS	192
asmn	5
ASpediaFI	39
ASpli	204
AssessORF	207
ASSET	191
ASSIGN	209
assorthead	10549
ASURAT	157
ATACCoGAPS	34
ATACseqQC	454
ATACseqTFEA	145
atena	155
AtlasRDF	20
atSNP	166
attract	220
AUCell	2884
autonomics	155
Autotuner	19
AWAggregator	1
AWFisher	162
awst	139
BaalChIP	207
BAC	70
bacon	248
BADER	174
BadRegionFinder	148
BAGS	166
ballgown	619
bambu	387
bamsignals	1007
BANDITS	169
bandle	152
Banksy	348
banocc	165
barbieQ	60
barcodetrackR	150
basecallQC	182
BaseSpaceR	172
Basic4Cseq	172
BASiCS	231
BASiCStan	133
BasicSTARRseq	145
basilisk	3371
basilisk.utils	3233
batchCorr	10
batchelor	4054
BatchQC	224
BatchSVG	80
BayesKnockdown	149
BayesPeak	67
BayesSpace	387
bayNorm	180
baySeq	474
BBCAnalyzer	187
BCRANK	236
bcSeq	151
BDMMAcorrect	43
beachmat	15953
beachmat.hdf5	182
beachmat.tiledb	67
beadarray	648
beadarraySNP	91
BeadDataPackR	563
BeadExplorer	8
BEARscc	56
BEAT	192
BEclear	176
bedbaser	58
beer	140
benchdamic	118
BERT	109
betaHMM	113
betr	45
bettr	122
BG2	121
bgafun	50
BgeeCall	164
BgeeDB	180
BGmix	60
bgx	129
BHC	77
BicARE	202
BiFET	162
BiGGR	165
bigmelon	183
bigmemoryExtras	41
bigPint	52
bim	4
BindingSiteFinder	145
bioassayR	178
Biobase	51841
biobroom	276
biobtreeR	122
bioCancer	175
BioCartaImage	118
BiocBaseUtils	7016
BiocBook	140
BiocCaseStudies	59
BiocCheck	1600
biocDatasets	9
BiocDockerManager	25
BiocFHIR	137
BiocFileCache	25533
BiocGenerics	60246
biocGraph	255
BiocHail	74
BiocHubsShiny	152
BiocInstaller	142
BiocIO	19268
biocmake	292
BiocNeighbors	11212
BiocOncoTK	63
BioCor	179
BiocParallel	48727
BiocPkgTools	238
biocroxytest	107
BiocSet	409
BiocSingular	12845
BiocSklearn	217
BiocStyle	5623
biocthis	281
BiocVersion	63286
biocViews	4320
BiocWorkflowTools	227
biodb	192
biodbChebi	142
biodbExpasy	35
biodbHmdb	141
biodbKegg	56
biodbLipidmaps	28
biodbMirbase	20
biodbNcbi	142
biodbNci	122
biodbUniprot	128
bioDist	309
BioGA	104
biomaRt	21307
BioMedR	7
biomformat	5753
BioMM	43
BioMVCClass	190
biomvRCNS	184
BioNAR	156
BioNERO	264
BioNet	332
BioNetStat	54
BioQC	217
BioSeqClass	70
biosigner	173
Biostrings	48383
biosvd	46
BioTIP	173
biotmle	164
biovizBase	4870
BiRewire	262
birta	47
birte	29
biscuiteer	162
BiSeq	217
BitSeq	84
blacksheepr	167
blima	169
BLMA	166
BloodGen3Module	159
bluster	6082
bnbc	204
bnem	137
BOBaFIT	146
borealis	125
BPRMeth	190
BRAIN	231
brainflowprobes	48
brainImageR	10
BrainSABER	28
BrainStars	46
branchpointer	180
breakpointR	155
BreastSubtypeR	70
brendaDb	145
BREW3R.r	116
BRGenomics	64
bridge	64
BridgeDbR	196
broadSeq	111
BrowserViz	204
BrowserVizDemo	15
BSgenome	12001
BSgenomeForge	231
bsseq	1383
BubbleTree	199
BufferedMatrix	176
BufferedMatrixMethods	177
bugsigdbr	545
BulkSignalR	88
BUMHMM	158
bumphunter	2440
BumpyMatrix	463
BUS	209
BUScorrect	169
BUSpaRse	262
BUSseq	148
CaDrA	124
CAEN	138
CAFE	187
CAGEfightR	269
cageminer	152
CAGEr	296
CALIB	75
calm	124
CAMERA	509
CAMTHC	16
CaMutQC	115
canceR	194
cancerclass	453
CancerInSilico	49
CancerMutationAnalysis	69
CancerSubtypes	90
CAnD	40
caOmicsV	42
cardelino	150
Cardinal	332
CardinalIO	224
CARDspa	85
CARNIVAL	243
casper	173
CATALYST	527
Category	1283
categoryCompare	200
CatsCradle	108
CausalR	176
cbaf	153
CBEA	61
cBioPortalData	420
CBNplot	168
cbpManager	152
CCAFE	79
ccfindR	164
ccImpute	141
ccmap	169
CCPlotR	144
CCPROMISE	165
ccrepe	213
CDI	124
celaref	154
celda	821
CellaRepertorium	45
CellBarcode	157
cellbaseR	151
CellBench	208
cellGrowth	39
cellHTS	65
cellHTS2	146
CelliD	275
cellity	171
CellMapper	147
cellmigRation	138
CellMixS	187
CellNOptR	243
cellscape	134
CellScore	139
CellTrails	175
cellTree	48
cellxgenedp	156
CEMiTool	245
censcyt	125
Cepo	173
ceRNAnetsim	133
CeTF	172
CexoR	197
CFAssay	147
cfdnakit	134
cfDNAPro	158
cfTools	127
CGEN	180
CGHbase	420
CGHcall	393
cghMCR	236
CGHnormaliter	197
CGHregions	179
ChAMP	766
CHARGE	16
charm	54
ChemmineOB	371
ChemmineR	840
CHETAH	205
chevreulPlot	71
chevreulProcess	77
chevreulShiny	60
ChIC	36
Chicago	192
chihaya	207
chimera	61
chimeraviz	195
ChIPanalyser	178
ChIPComp	163
chipenrich	209
ChIPexoQual	168
ChIPpeakAnno	959
ChIPQC	404
ChIPseeker	2161
chipseq	607
ChIPseqR	222
ChIPSeqSpike	28
ChIPsim	186
ChIPXpress	154
chopsticks	204
chroGPS	65
chromDraw	180
ChromHeatMap	202
ChromoViz	7
chromPlot	233
ChromSCape	139
chromstaR	105
chromswitch	53
chromVAR	1211
CHRONOS	162
cicero	330
CIMICE	141
CINdex	177
circRNAprofiler	177
CircSeqAlignTk	123
cisPath	142
CiteFuse	171
ClassifyR	361
cleanUpdTSeq	201
CleanUpRNAseq	111
cleaver	288
clevRvis	135
clippda	194
clipper	190
cliProfiler	134
cliqueMS	169
Clomial	171
Clonality	74
clonotypeR	47
clst	204
clstutils	198
CluMSID	135
ClustAll	119
clustComp	161
clusterExperiment	367
ClusterFoldSimilarity	120
ClusterJudge	161
clusterProfiler	22186
clusterSeq	159
ClusterSignificance	169
clusterStab	188
clustifyr	246
ClustIRR	127
clustSIGNAL	70
CMA	267
cmapR	507
CNAnorm	186
CNEr	2844
cn.farms	183
cn.mops	273
CNORdt	168
CNORfeeder	184
CNORfuzzy	179
CNORode	180
CNPBayes	32
CNTools	249
CNVfilteR	128
CNVgears	38
cnvGSA	169
CNViz	114
CNVMetrics	150
CNVPanelizer	157
CNVRanger	184
CNVrd2	184
CNVtools	46
cobindR	59
CoCiteStats	175
COCOA	172
codelink	240
CODEX	231
coexnet	41
CoGAPS	346
cogena	207
cogeqc	157
Cogito	147
coGPS	196
COHCAP	58
cola	233
comapr	133
combi	145
coMET	99
coMethDMR	153
compartmap	56
COMPASS	213
compcodeR	209
compEpiTools	168
CompGO	38
ComplexHeatmap	17348
CompoundDb	308
ComPrAn	125
compSPOT	107
conclus	20
concordexR	137
condcomp	5
condiments	185
CONFESS	159
consensus	151
ConsensusClusterPlus	2879
consensusDE	153
consensusOV	169
consensusSeekeR	162
consICA	167
CONSTANd	148
contiBAIT	58
conumee	262
convert	211
copa	184
COPDSexualDimorphism	6
copynumber	140
CopyNumber450k	23
CopyNumberPlots	169
CopywriteR	51
Coralysis	42
coRdon	290
CoRegFlux	15
CoRegNet	79
CoreGx	309
Cormotif	181
CorMut	41
coRNAi	53
corral	178
CORREP	56
coseq	207
CoSIA	109
cosmiq	190
cosmo	21
cosmoGUI	16
cosmosR	182
COSNet	163
COTAN	181
CountClust	41
countsimQC	237
covEB	151
CoverageView	180
covRNA	140
CPSM	66
cpvSNP	188
cqn	345
CRImage	214
CRISPRball	109
crisprBase	198
crisprBowtie	163
crisprBwa	114
crisprDesign	181
crisprScore	198
CRISPRseek	240
crisprseekplus	36
crisprShiny	112
CrispRVariants	208
crisprVerse	140
crisprViz	151
crlmm	299
CrossICC	8
crossmeta	101
crumblr	64
crupR	63
CSAR	199
csaw	499
csdR	132
CSSP	46
CSSQ	129
ctc	309
CTdata	127
CTDquerier	159
CTexploreR	113
ctgGEM	20
cTRAP	178
ctsGE	162
CTSV	132
cummeRbund	333
CuratedAtlasQueryR	132
customCMPdb	128
customProDB	178
CVE	25
cyanoFilter	144
cycle	180
cydar	188
cypress	126
CytoDx	153
cytofast	19
cytofkit	43
CyTOFpower	64
cytofQC	128
CytoGLMM	139
cytoKernel	140
cytolib	2423
cytomapper	391
CytoMDS	113
cytoMEM	170
CytoML	484
CytoPipeline	139
CytoPipelineGUI	112
CytoTree	23
cytoviewer	161
dada2	2522
dagLogo	197
daMA	205
DAMEfinder	154
DaMiRseq	190
Damsel	120
dandelionR	83
DAPAR	219
dar	104
DART	209
DASC	3
DASiR	28
dasper	30
DAVIDQuery	34
DBChIP	65
dcanr	254
DCATS	135
dce	90
dcGSA	151
DChIPRep	41
ddCt	225
ddgraph	38
ddPCRclust	183
dearseq	219
debCAM	167
debrowser	219
DECIPHER	2870
deco	37
DEComplexDisease	50
decompTumor2Sig	180
DeconRNASeq	365
decontam	1617
decontX	396
DeconvoBuddies	65
deconvR	157
decoupleR	1509
DEDS	71
DeeDeeExperiment	0
DeepBlueR	57
DeepPINCS	146
deepSNV	248
DeepTarget	109
DEFormats	282
DegCre	132
DegNorm	151
DEGraph	142
DEGreport	632
DEGseq	303
DelayedArray	43625
DelayedDataFrame	136
DelayedMatrixStats	16111
DelayedRandomArray	143
DelayedTensor	141
DELocal	129
deltaCaptureC	128
deltaGseg	176
DeMAND	145
DeMixT	174
demuxmix	261
demuxSNP	122
densvis	921
DEP	726
DepecheR	179
DepInfeR	138
DeProViR	27
DEqMS	357
derfinder	538
derfinderHelper	522
derfinderPlot	194
DEScan2	160
DESeq	198
DESeq2	22972
DEsingle	326
DESpace	142
destiny	787
DEsubs	177
DEWSeq	158
DExMA	139
DEXSeq	1466
dexus	65
DFP	176
DFplyr	89
DIAlignR	57
DiffBind	1145
diffcoexp	183
diffcyt	415
DifferentialRegulation	146
diffGeneAnalysis	170
diffHic	215
DiffLogo	193
diffloop	60
diffuStats	177
diffUTR	128
diggit	153
Dino	147
dinoR	119
Director	93
dir.expiry	3555
DirichletMultinomial	4408
discordant	185
DiscoRhythm	172
distinct	257
dittoSeq	1322
divergence	150
dks	152
DMCFB	148
DMCHMM	150
dmGsea	18
DMRcaller	205
DMRcate	1047
DMRforPairs	80
DMRScan	146
dmrseq	254
DNABarcodeCompatibility	123
DNABarcodes	237
DNAcopy	4368
DNAcycP2	71
DNAfusion	145
DNaseR	9
DNAshapeR	201
DNEA	31
domainsignatures	39
DominoEffect	137
dominoSignal	106
doppelgangR	195
DOQTL	37
Doscheda	164
DOSE	22031
doseR	161
doubletrouble	155
dpeak	34
drawProteins	249
dreamlet	173
DRIMSeq	340
DriverNet	187
DropletUtils	2421
drugTargetInteractions	134
DrugVsDisease	175
dSimer	19
DSS	708
dStruct	120
DTA	185
dualKS	59
Dune	131
DupChecker	26
DuplexDiscovereR	96
dupRadar	217
dyebias	216
DynDoc	1459
easier	180
EasyCellType	156
easylift	124
EasyqpcR	65
easyreporting	148
easyRNASeq	222
EBarrays	244
EBcoexpress	196
EBImage	2896
EBSEA	149
EBSeq	449
EBSeqHMM	80
ecolitk	214
EDASeq	1580
edd	20
EDDA	53
edge	211
edgeR	24579
EDIRquery	129
eds	343
eegc	60
EGAD	178
EGSEA	258
eiR	161
eisa	79
eisaR	193
ELBOW	52
ELMER	290
ELViS	72
EMDomics	193
EmpiricalBrownsMethod	177
ENCODExplorer	50
EnhancedVolcano	6284
enhancerHomologSearch	138
EnMCB	143
ENmix	381
EnrichDO	110
EnrichedHeatmap	716
EnrichmentBrowser	516
enrichplot	22206
enrichTF	51
enrichViewNet	126
ensembldb	9353
ensemblVEP	87
ENVISIONQuery	47
epialleleR	155
EpiCompare	128
epidecodeR	144
EpiDISH	729
epigenomix	176
epigraHMM	150
epihet	27
EpiMix	142
epimutacions	140
epiNEM	178
EpipwR	103
epiregulon	111
epiregulon.extra	124
epistack	150
epistasisGA	132
EpiTxDb	160
epivizr	198
epivizrChart	161
epivizrData	149
epivizrServer	149
epivizrStandalone	156
erccdashboard	195
erma	178
ERSSA	161
esATAC	172
escape	430
escheR	166
esetVis	174
eudysbiome	185
evaluomeR	148
EventPointer	188
EWCE	274
ExCluster	138
ExiMiR	204
exomeCopy	171
exomePeak	56
exomePeak2	97
exonmap	14
ExperimentHub	8048
ExperimentHubData	300
ExperimentSubset	143
explorase	58
ExploreModelMatrix	289
ExpressionAtlas	225
ExpressionView	74
exprExternal	2
externalVector	15
extraChIPs	153
fabia	257
facopy	26
factDesign	183
factR	132
faers	149
FamAgg	183
famat	147
farms	74
fastLiquidAssociation	157
FastqCleaner	192
fastreeR	160
fastseg	820
fbat	13
FCBF	57
fCCAC	172
fCI	179
fcoex	39
fcScan	153
fdrame	170
FEAST	231
FeatSeekR	115
fedup	142
FELLA	235
FEM	50
fenr	128
ffpe	175
fgga	139
FGNet	200
fgsea	23598
FilterFFPE	148
findIPs	112
FindIT2	160
FindMyFriends	48
FISHalyseR	149
fishpond	336
FitHiC	180
flagme	158
FLAMES	161
flipflop	37
flowAI	568
flowBeads	174
flowBin	155
flowcatchR	198
flowCHIC	186
flowCL	46
flowClean	291
flowClust	752
flowCore	2476
flowCut	193
flowCyBar	145
flowDensity	341
flowFit	37
flowFlowJo	38
flowFP	243
flowGate	152
flowGraph	143
flowMap	73
flowMatch	187
flowMeans	229
flowMerge	199
flowPeaks	264
flowPhyto	29
flowPloidy	163
flowPlots	155
flowQ	56
flowQB	42
FlowRepositoryR	33
FlowSOM	1015
flowSpecs	167
flowSpy	14
flowStats	509
flowTime	182
flowTrans	192
flowType	60
flowUtils	78
flowViz	913
flowVS	221
flowWorkspace	1145
fmcsR	291
fmrs	170
fobitools	145
focalCall	32
FoldGO	44
FourCSeq	51
FRASER	216
frenchFISH	116
FRGEpistasis	143
frma	207
frmaTools	181
FScanR	17
FunChIP	66
FunciSNP	60
funOmics	112
funtooNorm	163
FuseSOM	144
G4SNVHunter	105
GA4GHclient	144
GA4GHshiny	138
gaga	189
gage	822
gaggle	77
gaia	61
GAPGOM	34
GAprediction	132
garfield	142
GARS	148
GateFinder	137
gatom	148
gaucho	26
GBScleanR	146
gcapc	179
gcatest	177
gCMAP	54
gCMAPWeb	50
GCPtools	15
gCrisprTools	191
gcrma	1090
GCSConnection	16
GCSFilesystem	11
GCSscore	42
GDCRNATools	271
gDNAx	120
gDR	107
gDRcore	118
gDRimport	120
gDRstyle	114
gDRutils	113
GDSArray	216
gdsfmt	2223
GeDi	108
geecc	47
GEM	143
gemini	137
gemma.R	161
genArise	174
genbankr	83
gene2pathway	19
GeneAccord	45
GeneAnswers	92
geneAttribution	180
GeneBreak	175
geneClassifiers	164
GENE.E	29
GeneExpressionSignature	214
genefilter	11542
genefu	366
GeneGA	143
GeneGeneInteR	128
GeneGroupAnalysis	15
GeneMeta	235
GeneNetworkBuilder	210
GeneOverlap	765
geneplast	190
geneplotter	4010
GeneR	18
geneRecommender	184
GeneRegionScan	219
GeneRfold	7
geneRxCluster	170
GeneSelectMMD	177
GeneSelector	51
GENESIS	466
GeneSpring	13
GeneStructureTools	167
geNetClassifier	218
GeneticsBase	17
GeneticsDesign	46
GeneticsPed	208
GeneTonic	295
GeneTraffic	12
GeneTS	7
geneXtendeR	175
GENIE3	1500
genoCN	137
GenoGAM	39
genomation	722
GenomAutomorphism	141
GenomeBase	1
GenomeGraphs	70
GenomeInfoDb	56918
genomeIntervals	221
genomes	176
GenomicAlignments	22487
GenomicDataCommons	972
GenomicDistributions	193
GenomicFeatures	17122
GenomicFiles	1019
genomicInstability	159
GenomicInteractionNodes	129
GenomicInteractions	392
GenomicOZone	143
GenomicPlot	148
GenomicRanges	46446
GenomicScores	621
GenomicSuperSignature	161
GenomicTuples	172
Genominator	66
genoset	62
genotypeeval	43
GenoView	19
genphen	26
GenProSeq	132
GenRank	19
GenVisR	342
GeoDiff	138
GEOexplorer	156
GEOfastq	149
GEOmetadb	325
geomeTriD	102
GeomxTools	402
GEOquery	10318
GEOsearch	16
GEOsubmission	178
GeoTcgaData	195
gep2pep	149
gespeR	89
getDEE2	137
geva	149
GEWIST	146
geyser	84
gff3Plotter	2
gg4way	123
GGBase	68
ggbio	1757
ggcyto	838
ggkegg	535
ggmanh	246
ggmsa	607
GGPA	146
ggsc	170
ggseqalign	96
ggspavis	294
GGtools	88
ggtree	24165
ggtreeDendro	135
ggtreeExtra	1304
ggtreeSpace	109
GIGSEA	166
ginmappeR	108
gINTomics	116
girafe	210
GISPA	47
GLAD	277
GladiaTOX	148
Glimma	1008
glmGamPoi	5382
glmSparseNet	247
GlobalAncova	1025
globalSeq	156
globaltest	1638
GloScope	123
gmapR	207
GmicR	160
gmoviz	158
GMRP	142
GNET2	134
GNOSIS	115
goCluster	5
GOexpress	217
GOfuncR	338
GOFunction	54
GoogleGenomics	23
GOpro	181
goProfiles	201
GOSemSim	20272
goseq	1483
GOSim	91
goSorensen	130
goSTAG	191
GOstats	1224
GOsummaries	82
GOTHiC	201
goTools	193
GPA	133
gpart	35
gpls	246
gprege	56
gpuMagic	114
gQTLBase	33
gQTLstats	46
GrafGen	112
gramm4R	11
GRaNIE	151
granulator	206
graper	145
graph	19789
GraphAlignment	160
GraphAT	217
graphite	3547
GraphPAC	91
GRENITS	163
GreyListChIP	1022
GRmetrics	196
groHMM	166
GRridge	53
GSALightning	141
GSAR	201
GSCA	185
gscreend	161
GSEABase	8803
GSEABenchmarkeR	159
GSEAlm	207
GSEAmining	158
gsean	174
GSgalgoR	152
GSReg	165
GSRI	173
GSVA	7291
gtrellis	237
GUIDEseq	194
Guitar	261
Gviz	3134
GWAS.BAYES	145
gwascat	586
GWASTools	681
gwasurvivr	158
GWENA	240
gypsum	3456
h5mread	3396
h5vc	199
hapFabia	201
Harman	244
HarmonizR	150
Harshlight	157
hca	139
HCABrowser	10
HCAExplorer	8
HCAMatrixBrowser	4
HCsnip	43
HDF5Array	14947
HDTD	152
hdxmsqc	108
heatmaps	309
Heatplus	419
HelloRanges	181
HELP	190
HEM	186
hermes	270
HERON	120
Herper	185
hexbin	66
HGC	130
hiAnnotator	188
HIBAG	249
HicAggR	116
HiCBricks	223
HiCcompare	334
HiCDCPlus	168
HiCDOC	146
HiCExperiment	201
HiContacts	198
HiCool	121
HiCParser	59
HiCPotts	5
hicrep	14
hicVennDiagram	132
hierGWAS	152
hierinf	124
HilbertCurve	194
HilbertVis	233
HilbertVisGUI	118
HiLDA	163
hipathia	233
HIPPO	146
hiReadsProcessor	185
HIREewas	138
HiTC	265
hmdbQuery	161
HMMcopy	424
HoloFoodR	104
hoodscanR	168
hopach	340
HPAanalyze	259
hpar	337
HPAStainR	19
HPiP	152
HTqPCR	192
HTSanalyzeR	66
HTSeqGenie	50
htSeqTools	61
HTSFilter	259
HuBMAPR	94
HubPub	195
HumanTranscriptomeCompendium	62
hummingbird	128
HVP	16
HybridExpress	117
HybridMTest	204
hypeR	179
hyperdraw	188
hypergraph	214
iASeq	148
iasva	159
iBBiG	208
ibh	166
iBMQ	145
iCARE	181
Icens	403
icetea	153
iCheck	153
iChip	206
iClusterPlus	445
iCNV	156
iCOBRA	323
ideal	186
IdeoViz	180
idiogram	205
IdMappingAnalysis	61
IdMappingRetrieval	43
idpr	159
idr2d	170
IFAA	117
iFlow	14
igblastr	23
iGC	171
IgGeneUsage	153
igvR	201
igvShiny	138
IHW	750
illuminaio	2619
ILoReg	162
imageHTS	91
imageTCGA	55
IMAS	137
imcRtools	268
Imetagene	46
IMMAN	147
immApex	115
ImmuneSpaceR	57
immunoClust	176
immunogenViewer	84
immunotation	160
IMPCdata	143
ImpulseDE	13
ImpulseDE2	22
impute	10818
INDEED	128
iNETgrate	125
infercnv	1356
infinityFlow	150
Informeasure	127
InPAS	189
INPower	175
inSilicoDb	32
inSilicoMerging	34
INSPEcT	179
INTACT	120
InTAD	156
intansv	184
interacCircos	128
InteractionSet	1659
InteractiveComplexHeatmap	456
interactiveDisplay	207
interactiveDisplayBase	3442
InterCellar	167
IntEREst	160
InterMineR	74
IntOMICS	16
IntramiRExploreR	162
inveRsion	47
IONiseR	194
iontree	31
iPAC	96
iPath	132
ipdDb	173
IPO	215
IPPD	59
IRanges	56613
IRISFGM	33
IrisSpatialFeatures	8
ISAnalytics	135
iSEE	536
iSEEde	139
iSEEfier	122
iSEEhex	157
iSEEhub	179
iSEEindex	122
iSEEpathways	124
iSEEtree	139
iSEEu	199
iSeq	173
ISLET	140
islify	56
iSNetwork	6
isobar	222
IsoBayes	127
IsoCorrectoR	187
IsoCorrectoRGUI	128
IsoformSwitchAnalyzeR	367
IsoGeneGUI	85
ISoLDE	143
isomiRs	181
iSPlot	10
ITALICS	167
iterativeBMA	180
iterativeBMAsurv	157
iterClust	35
iteremoval	23
IVAS	167
ivygapSE	169
IWTomics	180
jazzPanda	66
jmosaics	35
joda	47
JunctionSeq	30
karyoploteR	863
katdetectr	128
KBoost	118
KCsmart	206
kebabs	228
KEGGgraph	5464
KEGGlincs	173
keggorth	8
keggorthology	235
KEGGprofile	56
KEGGREST	37565
KEGGSOAP	25
kimod	21
KinSwingR	140
kissDE	138
kmcut	108
KnowSeq	175
knowYourCG	124
koinar	101
LACE	185
lapmix	107
LBE	259
ldblock	205
LEA	734
LedPred	159
lefser	574
lemur	151
les	174
levi	138
lfa	333
Lheuristic	51
limma	36305
limmaGUI	214
limpa	65
limpca	116
LimROTS	62
LINC	24
LineagePulse	44
lineagespot	126
LinkHD	162
linkSet	4
Linnorm	229
LinTInd	131
lionessR	176
lipidr	219
LipidTrend	24
LiquidAssociation	170
lisaClust	220
lmdme	171
LMGene	54
LOBSTAHS	134
loci2path	139
logicFS	192
logitT	73
Logolas	22
lol	34
LOLA	269
LoomExperiment	649
LowMACA	46
LPE	192
LPEadj	92
lpNet	160
lpsymphony	917
LRBaseDbi	138
LRcell	139
lumi	1165
lute	111
LVSmiRNA	44
LymphoSeq	178
M3C	615
M3D	32
M3Drop	490
m6Aboost	119
maanova	103
Maaslin2	989
maaslin3	140
Macarron	124
macat	100
maCorrPlot	185
MACPET	29
MACSQuantifyR	130
MACSr	157
maDB	29
made4	323
MADSEQ	148
maftools	2599
MAGAR	134
MAGeCKFlute	292
magpie	137
magrene	133
MAI	137
maigesPack	105
MAIT	191
makecdfenv	283
makePlatformDesign	11
MANOR	202
manta	60
MantelCorr	156
MAPFX	113
mAPKL	64
maPredictDSC	161
mapscape	143
mariner	125
marr	135
marray	1760
martini	162
maser	208
maSigPro	424
maskBAD	186
MassArray	159
massiR	201
MassSpecWavelet	1666
MAST	2080
mastR	176
matchBox	148
matchprobes	19
MatrixGenerics	43799
MatrixQCvis	194
MatrixRider	157
matter	307
MaxContrastProjection	24
MBAmethyl	140
MBASED	176
MBCB	176
MBECS	135
mbkmeans	403
mbOmic	13
mBPCR	179
MBQN	153
mbQTL	118
MBttest	175
mcaGUI	61
MCbiclust	178
MCRestimate	53
mCSEA	187
mdgsa	48
mdp	181
mdqc	191
MDTS	139
MEAL	188
MeasurementError.cor	163
MEAT	154
MEB	158
MEDIPS	236
MEDME	174
megadepth	203
MEIGOR	185
Melissa	155
memes	278
MergeMaid	62
Mergeomics	176
MeSHDbi	240
meshes	233
meshr	198
MeSHSim	22
MesKit	179
messina	162
metaArray	60
Metab	109
metabCombiner	205
metabinR	128
MetaboAnnotation	275
MetaboCoreUtils	1947
MetaboDynamics	80
metabolomicsWorkbenchR	162
metabomxtr	154
MetaboSignal	207
metaCCA	161
MetaCyto	162
metagene	79
metagene2	175
metagenomeFeatures	44
metagenomeSeq	1688
metahdep	167
metaMS	224
MetaNeighbor	209
MetaPhOR	139
metapod	4943
metapone	147
metaSeq	193
metaseqR	58
metaseqR2	172
metavizr	41
MetaVolcanoR	62
metaX	19
MetCirc	178
MethCP	30
methimpute	169
methInheritSim	147
methodical	99
MethPed	166
MethReg	145
methrix	189
MethTargetedNGS	153
methVisual	46
methyAnalysis	69
MethylAid	200
methylCC	166
methylclock	261
methylGSA	204
methyLImp2	127
methylInheritance	173
methylKit	783
MethylMix	217
methylMnM	201
methylPipe	178
methylscaper	151
MethylSeekR	266
methylSig	157
methylumi	1450
methyvim	16
MetID	160
MetMashR	80
MetNet	175
mfa	166
Mfuzz	1396
MGFM	177
MGFR	167
MGnifyR	147
mgsa	202
mia	1434
miaDash	69
miaSim	149
miaTime	2
miaViz	371
MiChip	174
microbiome	1969
microbiomeDASim	143
microbiomeExplorer	153
microbiomeMarker	379
MicrobiomeProfiler	177
MicrobiotaProcess	508
microRNA	305
microSTASIS	130
MICSQTL	124
midasHLA	143
MIGSA	44
miloR	585
mimager	146
MIMOSA	65
mina	123
MineICA	195
minet	668
minfi	2220
MinimumDistance	193
MiPP	176
miQC	202
MIRA	174
MiRaGE	192
miRBaseConverter	274
miRcomp	180
mirIntegrator	177
MIRit	115
miRLAB	162
miRmine	60
miRNAmeConverter	157
miRNApath	162
miRNAtap	218
miRSM	159
miRsponge	9
miRspongeR	147
Mirsynergy	35
mirTarRnaSeq	152
missMethyl	1122
missRows	150
mist	56
mistyR	210
mitch	151
mitoClone2	149
mitology	82
mitoODE	33
mixOmics	3153
MLInterfaces	435
mlm4omics	8
MLP	216
MLSeq	214
MMAPPR2	23
MMDiff	38
MMDiff2	172
mmgmos	3
mmnet	33
MmPalateMiRNA	62
MMUPHin	248
mnem	176
moanin	174
mobileRNA	114
MobilityTransformR	14
MODA	151
ModCon	131
Modstrings	166
MOFA	17
MOFA2	731
MOGAMUN	133
mogsa	288
MoleculeExperiment	145
MOMA	162
monaLisa	231
monocle	3339
Moonlight2R	128
MoonlightR	187
MoPS	35
mosaics	268
mosbi	146
MOSClip	96
mosdef	324
MOSim	160
Motif2Site	142
motifbreakR	265
motifcounter	152
MotifDb	619
motifmatchr	1324
MotifPeeker	84
motifRG	60
motifStack	709
motifTestR	121
MotIV	71
MouseFM	169
MPAC	102
MPFE	138
mpra	187
MPRAnalyze	147
MQmetrics	25
mQTL.NMR	40
msa	2142
MSA2dist	170
MsBackendMassbank	146
MsBackendMetaboLights	103
MsBackendMgf	463
MsBackendMsp	323
MsBackendRawFileReader	152
MsBackendSql	133
MsCoreUtils	3442
MsDataHub	170
MSEADbi	6
MsExperiment	1287
MsFeatures	1350
msgbsR	158
MSGFgui	58
MSGFplus	39
msImpute	215
mslp	108
msmsEDA	297
msmsTests	313
MSnbase	3159
MSnID	336
mspms	89
MSPrep	167
msPurity	186
msqrob2	222
MsQuality	137
MSstats	604
MSstatsBig	122
MSstatsBioNet	65
MSstatsConvert	519
MSstatsLiP	150
MSstatsLOBD	121
MSstatsPTM	261
MSstatsQC	171
MSstatsQCgui	133
MSstatsSampleSize	44
MSstatsShiny	169
MSstatsTMT	323
MSstatsTMTPTM	7
MTseeker	9
MuData	154
Mulcom	202
MultiAssayExperiment	6134
MultiBaC	163
multiClust	187
multicrispr	149
MultiDataSet	1246
multiGSEA	178
multiHiCcompare	209
MultiMed	155
multiMiR	431
MultimodalExperiment	128
multiOmicsViz	67
MultiRNAflow	129
multiscan	178
multiSight	28
multistateQTL	107
multiWGCNA	170
multtest	11520
mumosa	148
MungeSumstats	791
muscat	556
muscle	434
musicatk	159
MutationalPatterns	380
MVCClass	213
mvGST	36
MWASTools	201
mygene	392
myvariant	178
mzID	3009
mzR	3301
NADfinder	162
NanoMethViz	179
NanoStringDiff	180
NanoStringNCTools	385
NanoStringQCPro	55
nanotatoR	39
NanoTube	170
NarrowPeaks	43
NBAMSeq	173
NBSplice	35
ncdfFlow	1077
ncGTW	172
NCIgraph	121
ncRNAtools	136
ndexr	151
neaGUI	27
nearBynding	160
Nebulosa	1272
NeighborNet	49
nem	88
nempi	135
NetActivity	119
netbenchmark	29
netbiov	83
netboost	146
netboxr	33
netDx	50
nethet	165
netOmics	34
NetPathMiner	176
netprioR	132
netReg	24
netresponse	195
NetSAM	184
netSmooth	170
networkBMA	76
netZooR	97
NeuCA	53
NewWave	165
NGScopy	40
ngsReports	178
nipalsMCIA	136
nnNorm	208
nnSVG	214
NOISeq	595
nondetects	108
NoRCE	142
normalize450K	158
NormalyzerDE	250
NormqPCR	258
normr	218
NPARC	154
npGSEA	161
NTW	152
nucleoSim	159
nucleR	219
nuCpos	156
nudge	59
nullranges	243
NuPoP	207
NxtIRFcore	25
occugene	161
OCplus	207
octad	126
ODER	19
odseq	156
OGRE	136
OGSA	39
oligo	2309
oligoClasses	1681
OLIN	224
OLINgui	183
omada	119
OmaDB	217
omicade4	215
OmicCircos	285
omicplotR	168
omicRexposome	167
OmicsLonDA	46
OmicsMarkeR	28
OmicsMLRepoR	85
OMICsPCA	176
omicsPrint	171
omicsViewer	153
Omixer	157
OmnipathR	943
ompBAM	184
omXplore	106
Onassis	37
oncomix	166
oncoscanR	145
OncoScore	143
OncoSimulR	196
oneChannelGUI	73
oneSENSE	48
onlineFDR	122
ontoCAT	51
ontoProc	231
ontoTools	31
openCyto	653
openPrimeR	187
openPrimeRui	66
OpenStats	117
OperaMate	22
oposSOM	216
oppar	171
oppti	108
optimalFlow	146
OPWeight	151
OrderedList	193
ORFhunteR	152
ORFik	265
OrganismDbi	2429
Organism.dplyr	388
orthogene	503
orthos	134
OSAT	187
Oscope	183
OSTA.data	71
OTUbase	169
OutlierD	55
OUTRIDER	268
OutSplice	135
OVESEG	143
PAA	197
packFinder	162
padma	162
PADOG	295
pageRank	139
PAIRADISE	180
paircompviz	164
pairedGSEA	107
pairkat	133
pairseqsim	2
pamr	33
pandaR	216
panelcn.mops	156
PAnnBuilder	49
PanomiR	134
panp	196
PANR	193
PanViz	42
PanVizGenerator	42
PAPi	43
pareg	45
parglms	153
parody	181
partCNV	121
PAST	151
Path2PPI	184
pathifier	197
pathlinkR	154
pathMED	41
PathNet	173
PathoStat	187
pathprint	22
pathRender	177
pathVar	55
pathview	4779
pathwayPCA	179
PathwaySplice	20
PatientGeneSets	10
paxtoolsr	97
Pbase	43
pbcmc	13
pcaExplorer	390
pcaGoPromoter	40
pcaMethods	5118
PCAN	178
PCAtools	1233
pcot2	83
PCpheno	69
pcxn	45
PDATK	167
pdInfoBuilder	211
pdmclass	50
PeacoQC	287
peakPantheR	144
PECA	187
peco	152
Pedixplorer	117
pengls	130
PepSetTest	98
PepsNMR	179
pepStat	157
pepXMLTab	162
PERFect	32
periodicDNA	153
perturbatr	28
pfamAnalyzeR	307
PFP	25
PGA	41
pgca	128
PGSEA	108
pgUtils	16
pgxRpi	118
phantasus	215
phantasusLite	125
PharmacoGx	320
phemd	42
phenoDist	35
PhenoGeneRanker	125
phenomis	141
phenopath	185
phenoTest	207
PhenStat	181
philr	242
PhIPData	157
phosphonormalizer	137
PhosR	212
PhyloProfile	174
phyloseq	5736
Pi	65
piano	435
PICB	75
pickgene	154
PICS	170
Pigengene	195
PING	164
pint	40
pipeComp	157
pipeFrame	198
PIPETS	113
Pirat	95
PIUMA	110
pkgDepTools	81
planet	260
planttfhunter	122
plasmut	116
plateCore	65
plethy	70
plgem	209
plier	229
PloGO2	43
plotgardener	271
plotGrouper	131
PLPE	179
plrs	45
PLSDAbatch	125
plw	61
plyinteractions	125
plyranges	1089
plyxp	98
pmm	129
pmp	206
PoDCall	118
podkat	184
poem	63
pogos	191
polyester	135
Polyfit	35
PolySTest	97
Polytect	91
POMA	223
POST	17
PoTRA	20
PowerExplorer	19
powerTCR	349
POWSC	137
ppcseq	147
PPInfer	214
ppiStats	93
pqsfinder	208
prada	64
pram	153
prebs	174
preciseTAD	156
PrecisionTrialDrawer	28
PREDA	202
predictionet	64
preprocessCore	14743
primirTSS	146
PrInCE	158
Prize	25
proActiv	169
proBAMr	153
proBatch	40
PROcess	211
procoil	207
ProCoNA	40
proDA	292
proFIA	49
profileplyr	314
profileScoreDist	137
progeny	582
projectR	174
pRoloc	353
pRolocGUI	220
PROMISE	187
PRONE	110
PROPER	212
PROPS	155
Prostar	200
prot2D	27
proteasy	32
proteinProfiles	138
ProteoDisco	121
ProteomicsAnnotationHubData	32
ProteoMM	166
proteoQC	44
protGear	140
ProtGenerics	11019
PSEA	73
psichomics	175
PSICQUIC	50
PSMatch	2379
psygenet2r	89
ptairMS	133
PubScore	27
pulsedSilac	26
puma	222
PureCN	268
pvac	175
pvca	338
Pviz	154
pwalign	7049
PWMEnrich	267
pwOmics	118
pwrEWAS	29
qckitfastq	123
qcmetrics	193
QDNAseq	401
QFeatures	2771
qmtools	142
qpcrNorm	176
qpgraph	254
qPLEXanalyzer	159
qrqc	63
QRscore	70
qsea	167
qsmooth	182
QSutils	216
qsvaR	173
QTLExperiment	124
Qtlizer	150
QUALIFIER	50
quantiseqr	678
quantro	249
quantsmooth	665
QuartPAC	73
QuasR	388
QuaternaryProd	166
QUBIC	198
qusage	440
qvalue	20443
R3CPET	163
r3Cseq	208
R453Plus1Toolbox	202
R4RNA	692
RadioGx	151
raer	124
RaggedExperiment	732
RAIDS	128
rain	210
rama	61
RamiGO	32
ramr	148
ramwas	185
RandomWalkRestartMH	58
randPack	165
randRotation	132
RankProd	321
RAREsim	124
RareVariantVis	195
Rariant	55
Rarr	242
rawDiag	113
rawrr	242
RbcBook1	279
Rbec	124
RBGL	8717
RBioFormats	312
RBioinf	187
rBiopaxParser	238
rBLAST	264
RBM	163
Rbowtie	460
Rbowtie2	344
RbowtieCuda	36
rbsurv	190
Rbwa	121
Rcade	82
RCAS	192
RCASPAR	144
rcellminer	195
rCGH	198
Rchemcpp	43
RchyOptimyx	52
RcisTarget	1345
RCM	161
Rcollectl	73
Rcpi	229
RCSL	144
Rcwl	137
RcwlPipelines	132
RCX	144
RCy3	863
RCyjs	174
RCytoscape	40
RDAVIDWebService	75
Rdbi	17
RdbiPgSQL	12
rDGIdb	71
Rdisop	530
RDRToolbox	211
ReactomeContentService4R	66
ReactomeGraph4R	33
ReactomeGSA	292
ReactomePA	3309
readat	23
ReadqPCR	260
reb	60
REBET	137
rebook	204
receptLoss	128
reconsi	131
recount	437
recount3	391
recountmethylation	155
recoup	174
RedeR	346
RedisParam	123
REDseq	181
ReducedExperiment	85
RefNet	33
RefPlus	100
RegEnrich	159
regionalpcs	116
RegionalST	100
regioneR	1823
regioneReloaded	136
regionReport	231
regsplice	140
regutools	140
REMP	166
Repitools	347
ReportingTools	593
reposTools	2
RepViz	142
ReQON	87
ResidualMatrix	3903
RESOLVE	127
Resourcerer	26
restfulSE	81
retrofit	125
ReUseData	109
rexposome	197
rfaRm	140
Rfastp	209
RFLOMICS	59
rflowcyt	27
rfPred	187
rGADEM	385
RGalaxy	51
rGenomeTracks	132
Rgin	28
RGMQL	48
RgnTX	137
rgoslin	197
RGraph2js	171
Rgraphviz	8977
rGREAT	676
RGSEA	193
rgsepd	175
rhdf5	22387
rhdf5client	176
rhdf5filters	21668
Rhdf5lib	23401
rhinotypeR	96
Rhisat2	240
Rhtslib	23629
rHVDM	73
RiboCrypt	114
RiboDiPA	158
RiboProfiling	194
ribor	159
riboSeqR	197
ribosomeProfilingQC	169
rifi	121
rifiComparative	117
Rigraphlib	304
rigvf	63
RImmPort	138
Ringo	168
Rintact	14
RIPAT	38
RIPSeeker	65
Risa	142
RITAN	127
RIVER	175
RJMCMCNucleosomes	150
RLassoCox	135
RLMM	169
RLSeq	29
RMAGEML	13
Rmagpie	171
RMAPPER	16
RMassBank	232
rMAT	49
rmelting	152
RmiR	52
Rmmquant	150
rmspc	134
RNAAgeCalc	182
RNAdecay	132
rnaEditr	146
RNAinteract	69
RNAither	74
RNAmodR	148
RNAmodR.AlkAnilineSeq	135
RNAmodR.ML	159
RNAmodR.RiboMethSeq	127
RNAprobR	35
RNAsense	141
rnaseqcomp	178
RNAseqCovarImpute	108
rnaSeqMap	55
RNASeqPower	278
RNASeqR	28
RnaSeqSampleSize	189
RnBeads	368
Rnits	156
roar	179
roastgsa	121
ROC	1090
ROCpAI	130
RolDE	150
Roleswitch	41
Rolexa	34
rols	414
ROntoTools	246
ropls	1312
ROSeq	163
ROTS	302
RPA	176
rprimer	153
RProtoBufLib	2324
RpsiXML	91
rpx	331
Rqc	357
rqt	129
rqubic	180
rRDP	184
Rredland	14
RRHO	184
rrvgo	567
Rsamtools	23457
rsbml	210
rScudo	151
rsemmed	134
RSeqAn	167
rSFFreader	46
RSNPper	11
Rsubread	2066
RSVSim	172
rSWeeP	148
rTANDEM	57
RTCA	173
RTCGA	447
RTCGAToolbox	504
RTN	280
RTNduals	149
RTNsurvival	152
RTools4TB	7
RTopper	203
Rtpca	144
rtracklayer	20128
Rtreemix	162
rTRM	199
rTRMui	172
RUCova	71
runibic	135
Ruuid	19
RUVcorr	163
RUVnormalize	172
RUVSeq	914
Rvisdiff	116
RVS	145
RWebServices	30
rWikiPathways	435
S4Arrays	41967
S4Vectors	56424
safe	563
SAGElyzer	7
sagenhaft	194
SAGx	63
SAIGEgds	174
samExploreR	17
sampleClassifier	140
SamSPECTRAL	223
sangeranalyseR	294
sangerseqR	708
SanityR	6
SANTA	179
sapFinder	48
saps	17
SARC	133
sarks	133
saseR	102
satuRn	360
savR	43
SBGNview	216
sbgr	11
SBMLR	173
SC3	403
scafari	9
Scale4C	175
ScaledMatrix	12666
scAlign	20
scanMiR	150
scanMiRApp	133
scAnnotatR	196
SCAN.UPC	191
SCANVIS	162
SCArray	159
SCArray.sat	126
SCATE	26
scater	7107
scatterHatch	124
scBFA	153
SCBN	141
scBubbletree	145
scCB2	130
scClassifR	10
scClassify	206
sccomp	189
scDataviz	169
scDblFinder	1999
scDD	218
scDDboost	123
scde	479
scDesign3	151
scDiagnostics	110
scDotPlot	134
scds	462
SCFA	151
scFeatureFilter	159
scFeatures	137
scfind	22
scGPS	153
schex	206
scHiCcompare	75
scHOT	170
scider	127
scifer	136
ScISI	87
scMAGeCK	21
scmap	330
scMerge	417
scMET	147
scmeth	148
scMitoMut	113
scMultiSim	141
SCnorm	194
scone	206
Sconify	158
SCOPE	154
scoreInvHap	170
scoup	91
scp	265
scPCA	175
scPipe	190
scQTLtools	70
scran	4946
scrapper	372
scReClassify	141
scRecover	173
screenCounter	115
ScreenR	129
scRepertoire	760
scRNAseqApp	137
scruff	163
scry	358
scShapes	123
scsR	48
scTensor	147
scTGIF	189
scTHI	131
scTreeViz	132
scuttle	9170
scviR	109
SDAMS	157
seahtrue	103
sechm	245
segmenter	134
segmentSeq	211
selectKSigs	129
SELEX	178
SemDist	188
semisup	145
SemSim	6
SEPA	24
SEPIRA	50
seq2pathway	228
seqArchR	134
seqArchRplus	127
SeqArray	932
seqbias	75
seqCAT	162
seqCNA	83
seqcombo	133
SeqGate	134
SeqGSEA	252
seq.hotSPOT	114
Seqinfo	904
seqLogo	3497
seqPattern	750
seqplots	55
seqsetvis	172
SeqSQC	197
seqTools	170
SeqVarTools	507
SEraster	67
sesame	786
SEtools	192
sevenbridges	180
sevenC	169
SGCP	163
SGSeq	368
SharedObject	187
shinyDSP	72
shinyepico	151
shiny.gosling	124
shinyMethyl	223
shinyTANDEM	38
ShortRead	5972
SIAMCAT	224
SICtools	173
sigaR	43
SigCheck	150
sigFeature	354
SigFuge	190
siggenes	2961
sights	170
signatureSearch	247
signeR	179
signet	11
signifinder	122
sigPathway	79
SigsPack	134
sigsquared	155
SIM	176
SIMAT	176
SimBindProfiles	89
SimBu	186
SIMD	137
SimFFPE	127
similaRpeak	186
SIMLR	229
simona	591
simPIC	112
simpleaffy	96
simpleSeg	196
simplifyEnrichment	1160
simulatorAPMS	14
simulatorZ	35
sincell	198
single	36
SingleCellAlleleExperiment	108
SingleCellExperiment	17203
SingleCellSignalR	276
singleCellTK	326
SingleMoleculeFootprinting	138
SingleR	4633
singscore	1549
SiPSiC	116
SISPA	51
sitadela	133
Site2Target	51
sitePath	170
sizepower	165
SJava	25
sketchR	111
skewr	150
slalom	142
SLGI	89
slingshot	1884
slinky	34
SLqPCR	171
SMAD	131
SMAP	90
smartid	111
SMITE	165
smoothclust	114
smoppix	70
SNAGEE	171
snapCGH	99
snapcount	141
snifter	230
snm	203
SNPchip	65
SNPediaR	134
SNPhood	193
snpMatrix	21
SNPRelate	1837
snpStats	2082
soGGi	439
sojourner	34
SomatiCA	36
SomaticSignatures	241
SOMNiBUS	121
sosta	88
SpaceMarkers	121
SpacePAC	114
SpaceTrooper	6
spacexr	153
spade	39
Spaniel	170
SpaNorm	118
sparrow	402
SparseArray	44694
sparseDOSSA	40
sparseMatrixStats	15559
sparsenetgls	126
SparseSignatures	181
spaSim	139
SpatialCPie	174
spatialDE	177
SpatialDecon	241
SpatialExperiment	5783
SpatialExperimentIO	89
spatialFDA	103
SpatialFeatureExperiment	299
spatialHeatmap	231
SpatialOmicsOverlay	121
spatialSimGP	85
spatzie	141
speckle	327
specL	186
SpeCond	213
Spectra	2081
SpectralTAD	187
SpectraQL	100
SpectriPy	5
SPEM	177
SPIA	617
SPIAT	207
spicyR	275
SpidermiR	50
spikeLI	153
spiky	138
spillR	112
spkTools	175
splatter	449
splicegear	54
spliceR	31
spliceSites	45
SpliceWiz	198
SplicingFactory	129
SplicingGraphs	238
SplineDV	90
splineTCDiffExpr	1
splineTimeR	180
SPLINTER	143
splots	210
SPONGE	167
spoon	110
SpotClean	179
SPOTlight	367
spotSegmentation	45
SpotSweeper	144
spqn	148
SPsimSeq	184
SQLDataFrame	142
SQUADD	57
squallms	98
sRACIPE	162
SRAdb	451
sRAP	56
SRGnet	19
srnadiff	142
sscore	74
sscu	169
sSeq	249
ssize	194
sSNAPPY	185
SSPA	142
ssPATHS	152
ssrch	151
ssviz	179
StabMap	96
stageR	285
stam	14
STAN	66
standR	212
staRank	81
StarBioTrek	56
Starr	74
STATegRa	187
Statial	159
statTarget	199
STdeconvolve	116
stepNorm	182
stepwiseCM	46
stJoincount	138
strandCheckR	157
Streamer	171
STRINGdb	1783
STROMA4	34
struct	220
Structstrings	147
structToolbox	216
StructuralVariantAnnotation	246
SubCellBarCode	159
subSeq	188
SUITOR	122
SummarizedBenchmark	62
SummarizedExperiment	42558
Summix	124
supersigs	182
supraHex	260
surfaltr	144
SurfR	102
survClust	105
survcomp	1467
survtype	144
Sushi	102
sva	7410
svaNUMT	115
SVAPLSseq	14
svaRetro	133
SVM2CRM	26
SVMDO	132
SVP	76
SWATH2stats	165
SwathXtend	151
swfdr	175
SwimR	45
switchBox	175
switchde	153
synapsis	144
synapter	170
synergyfinder	316
SynExtend	157
synlet	171
SynMut	136
syntenet	184
systemPipeR	1266
systemPipeShiny	155
systemPipeTools	125
tadar	125
TADCompare	182
tanggle	160
TAPseq	154
target	155
TargetDecoy	152
TargetScore	184
TargetSearch	195
TarSeqQC	59
TaxSEA	62
TBSignatureProfiler	141
TCC	322
TCGAbiolinks	5132
TCGAbiolinksGUI	51
TCGAutils	627
TCseq	772
TDARACNE	55
TDbasedUFE	130
TDbasedUFEadv	133
TEKRABber	179
TENET	61
TENxIO	156
tenXplore	167
TEQC	182
terapadog	72
ternarynet	161
terraTCGAdata	125
TFARM	145
TFBSTools	3256
TFEA.ChIP	198
TFHAZ	166
TFutils	176
tidybulk	314
tidyCoverage	111
tidyFlowCore	98
tidyomics	136
tidysbml	101
tidySingleCellExperiment	305
tidySpatialExperiment	135
tidySummarizedExperiment	311
tidytof	108
tigre	182
TileDBArray	151
tilingArray	240
timecourse	196
timeOmics	175
timescape	146
TimeSeriesExperiment	33
TimiRGeN	37
TIN	190
TissueEnrich	286
TitanCNA	173
tkWidgets	1456
tLOH	138
TMixClust	153
TMSig	98
TNBC.CMS	47
TnT	143
TOAST	539
tofsims	31
tomoda	143
tomoseqr	141
TOP	111
ToPASeq	41
topconfects	232
topdownr	162
topGO	2579
ToxicoGx	155
TPP	218
TPP2D	154
tpSVG	110
tracktables	261
trackViewer	663
tradeSeq	708
TrajectoryGeometry	123
TrajectoryUtils	2081
transcriptogramer	160
transcriptR	192
transformGamPoi	143
transite	166
tRanslatome	215
transmogR	109
transomics2cytoscape	158
TransView	125
TraRe	22
traseR	181
Travel	5
traviz	73
TreeAndLeaf	187
treeclimbR	114
treeio	23811
treekoR	173
TreeSummarizedExperiment	2171
TREG	147
trena	61
TReNA	3
Trendy	149
TRESS	138
tricycle	336
TrIdent	73
triform	46
trigger	167
trio	216
triplex	191
tripr	145
tRNA	153
tRNAdbImport	142
tRNAscanImport	139
TRONCO	198
TSAR	107
TSCAN	587
tscR	30
tspair	66
TSRchitect	39
TSSi	39
ttgsea	129
TTMap	156
TurboNorm	192
TVTB	150
tweeDEseq	214
twilight	222
twoddpcr	171
txcutr	131
txdbmaker	4815
tximeta	1099
tximport	3684
TxRegInfra	16
TypeInfo	95
UCell	1646
UCSC.utils	41855
Ularcirc	160
UMI4Cats	151
uncoverappLib	143
UNDO	187
unifiedWMWqPCR	147
UniProt.ws	608
Uniquorn	184
universalmotif	1055
updateObject	133
UPDhmm	103
uSORT	159
VAExprs	131
VanillaICE	252
VarCon	153
variancePartition	1079
VariantAnnotation	8203
VariantExperiment	104
VariantFiltering	190
VariantTools	227
vasp	12
VaSP	154
vbmp	225
VCFArray	145
VDJdive	139
Vega	37
VegaMC	208
velociraptor	209
veloviz	128
VennDetail	284
VERSO	128
vidger	193
viper	829
virtualArray	15
ViSEAGO	175
VisiumIO	155
visiumStitched	83
vissE	197
vmrseq	51
Voyager	234
VplotR	162
vsclust	131
vsn	5057
vtpnet	186
vulcan	132
waddR	115
wateRmelon	867
wavClusteR	162
waveTiling	44
weaver	173
webbioc	190
weitrix	166
widgetInvoke	6
widgetTools	1452
wiggleplotr	216
wpm	165
wppi	121
Wrench	1664
XAItest	57
XBSeq	42
xCell2	93
XCIR	12
xcms	1574
xcore	138
XDE	211
XeniumIO	64
xenLite	94
Xeva	159
XINA	167
xmapbridge	182
xmapcore	11
XNAString	131
xps	67
XVector	51941
y2hStat	4
yamss	149
YAPSA	187
yaqcaffy	52
yarn	207
zellkonverter	2011
zenith	184
zFPKM	188
zinbwave	762
zitools	97
zlibbioc	43907
ZygosityPredictor	121