Package	Download_score
a4	68
a4Base	123
a4Classif	97
a4Core	142
a4Preproc	162
a4Reporting	107
ABAEnrichment	8
ABarray	60
abseqR	49
ABSSeq	97
acde	64
ACE	79
aCGH	177
ACME	71
ADaCGH2	56
ADAM	106
ADAMgui	87
adaptest	3
adductomicsR	51
ADImpute	66
adSplit	56
adverSCarial	21
AffiXcan	51
affxparser	1602
affy	8324
affycomp	84
AffyCompatible	20
affyContam	83
affycoretools	379
AffyExpress	7
affyILM	51
affyio	8200
affylmGUI	64
affyPara	8
affypdnn	6
affyPLM	1285
affyQCReport	11
AffyRNADegradation	48
AffyTiling	3
AGDEX	55
aggregateBioVar	61
Agi4x44PreProcess	3
agilp	91
AgiMicroRna	126
AHMassBank	39
AIMS	410
airpart	49
alabaster	39
alabaster.base	194
alabaster.bumpy	73
alabaster.files	21
alabaster.mae	78
alabaster.matrix	165
alabaster.ranges	152
alabaster.sce	98
alabaster.schemas	188
alabaster.se	158
alabaster.spatial	72
alabaster.string	82
alabaster.vcf	73
ALDEx2	1148
alevinQC	73
AllelicImbalance	80
AlphaBeta	49
AlphaMissenseR	2
alpine	49
ALPS	3
AlpsNMR	57
alsace	8
altcdfenvs	92
AMARETTO	116
AMOUNTAIN	90
amplican	68
ampliQueso	4
AnalysisPageServer	4
anamiR	4
Anaquin	53
ANCOMBC	1175
AneuFinder	79
ANF	42
animalcules	105
annaffy	254
AnnBuilder	1
annmap	107
annotate	18408
AnnotationDbi	36705
AnnotationFilter	9962
AnnotationForge	2521
AnnotationFuncs	9
AnnotationHub	10355
AnnotationHubData	339
annotationTools	116
annotatr	446
anota	71
anota2seq	66
antiProfiles	59
AnVIL	606
AnVILBilling	51
AnVILPublish	46
AnVILWorkflow	34
APAlyzer	59
apComplex	51
apeglm	3324
APL	110
applera	1
appreci8R	89
aroma.light	1909
ArrayExpress	415
ArrayExpressHTS	11
arrayMagic	2
arrayMvout	44
arrayQCplot	1
arrayQuality	83
arrayQualityMetrics	493
ArrayTools	9
ArrayTV	6
ARRmNormalization	48
artMS	65
ASAFE	50
ASEB	53
ASGSCA	57
ASICS	73
asmn	1
ASpediaFI	8
ASpli	90
AssessORF	48
ASSET	100
ASSIGN	87
ASURAT	57
ATACCoGAPS	36
ATACseqQC	323
ATACseqTFEA	51
atena	109
AtlasRDF	3
atSNP	56
attract	54
AUCell	2102
autonomics	51
Autotuner	3
AWFisher	51
awst	50
BaalChIP	56
BAC	19
bacon	93
BADER	63
BadRegionFinder	45
BAGS	47
ballgown	636
bambu	257
bamsignals	1086
BANDITS	99
bandle	51
Banksy	2
banocc	67
barcodetrackR	47
basecallQC	57
BaseSpaceR	60
Basic4Cseq	51
BASiCS	154
BASiCStan	45
BasicSTARRseq	52
basilisk	4577
basilisk.utils	4176
batchelor	3740
BatchQC	97
BayesKnockdown	45
BayesPeak	8
BayesSpace	211
bayNorm	74
baySeq	371
BBCAnalyzer	47
BCRANK	56
bcSeq	52
BDMMAcorrect	34
beachmat	15061
beachmat.hdf5	32
beadarray	701
beadarraySNP	50
BeadDataPackR	668
BeadExplorer	1
BEARscc	44
BEAT	46
BEclear	60
beer	51
benchdamic	71
BERT	2
betaHMM	1
betr	5
BG2	37
bgafun	5
BgeeCall	48
BgeeDB	109
BGmix	31
bgx	51
BHC	86
BicARE	125
BiFET	49
BiGGR	56
bigmelon	51
bigmemoryExtras	8
bigPint	45
bim	1
BindingSiteFinder	54
bioassayR	56
Biobase	46258
biobroom	172
biobtreeR	53
bioCancer	62
BioCartaImage	19
BiocBaseUtils	4867
BiocBook	22
BiocCaseStudies	7
BiocCheck	1573
biocDatasets	1
BiocDockerManager	33
BiocFHIR	41
BiocFileCache	24600
BiocGenerics	54078
biocGraph	153
BiocHail	32
BiocHubsShiny	71
BiocInstaller	528
BiocIO	18561
BiocNeighbors	9856
BiocOncoTK	68
BioCor	76
BiocParallel	42104
BiocPkgTools	160
biocroxytest	1
BiocSet	240
BiocSingular	11590
BiocSklearn	61
BiocStyle	6212
biocthis	215
BiocVersion	57113
biocViews	4203
BiocWorkflowTools	173
biodb	183
biodbChebi	75
biodbExpasy	42
biodbHmdb	54
biodbKegg	61
biodbLipidmaps	42
biodbMirbase	38
biodbNcbi	45
biodbNci	40
biodbUniprot	45
bioDist	243
biomaRt	23919
BioMedR	1
biomformat	5297
BioMM	30
BioMVCClass	45
biomvRCNS	33
BioNAR	53
BioNERO	228
BioNet	258
BioNetStat	66
BioQC	112
BioSeqClass	8
biosigner	74
Biostrings	43548
biosvd	5
BioTIP	66
biotmle	56
biovizBase	5448
BiRewire	109
birta	9
birte	3
biscuiteer	53
BiSeq	132
BitSeq	15
blacksheepr	48
blima	45
BLMA	58
BloodGen3Module	116
bluster	4618
bnbc	102
bnem	46
BOBaFIT	51
borealis	39
BPRMeth	81
BRAIN	95
brainflowprobes	44
brainImageR	1
BrainSABER	7
BrainStars	5
branchpointer	64
breakpointR	58
brendaDb	43
BRGenomics	143
bridge	11
BridgeDbR	77
BrowserViz	161
BrowserVizDemo	1
BSgenome	13022
BSgenomeForge	73
bsseq	1369
BubbleTree	56
BufferedMatrix	87
BufferedMatrixMethods	46
bugsigdbr	159
BUMHMM	41
bumphunter	2594
BumpyMatrix	498
BUS	45
BUScorrect	42
BUSpaRse	185
BUSseq	43
CaDrA	20
CAEN	39
CAFE	54
CAGEfightR	141
cageminer	44
CAGEr	100
CALIB	6
calm	46
CAMERA	469
CAMTHC	2
canceR	68
cancerclass	67
CancerInSilico	15
CancerMutationAnalysis	6
CancerSubtypes	125
CAnD	5
caOmicsV	3
cardelino	52
Cardinal	150
CardinalIO	83
CARNIVAL	158
casper	47
CATALYST	433
Category	1858
categoryCompare	52
CausalR	62
cbaf	48
CBEA	98
cBioPortalData	430
CBNplot	116
cbpManager	47
ccfindR	83
ccImpute	42
ccmap	71
CCPlotR	25
CCPROMISE	51
ccrepe	80
CDI	18
celaref	61
celda	589
CellaRepertorium	54
CellBarcode	51
cellbaseR	60
CellBench	120
cellGrowth	5
cellHTS	5
cellHTS2	174
CelliD	239
cellity	55
CellMapper	53
cellmigRation	46
CellMixS	75
CellNOptR	156
cellscape	41
CellScore	43
CellTrails	48
cellTree	11
cellxgenedp	105
CEMiTool	123
censcyt	51
Cepo	162
ceRNAnetsim	48
CeTF	68
CexoR	46
CFAssay	51
cfdnakit	23
cfDNAPro	47
cfTools	36
CGEN	59
CGHbase	406
CGHcall	372
cghMCR	53
CGHnormaliter	48
CGHregions	64
ChAMP	562
CHARGE	3
charm	6
ChemmineOB	326
ChemmineR	914
CHETAH	92
ChIC	22
Chicago	90
chihaya	48
chimera	7
chimeraviz	95
ChIPanalyser	45
ChIPComp	54
chipenrich	146
ChIPexoQual	50
ChIPpeakAnno	921
ChIPQC	311
ChIPseeker	1712
chipseq	561
ChIPseqR	68
ChIPSeqSpike	6
ChIPsim	72
ChIPXpress	85
chopsticks	85
chroGPS	5
chromDraw	45
ChromHeatMap	115
ChromoViz	1
chromPlot	125
ChromSCape	58
chromstaR	79
chromswitch	28
chromVAR	1056
CHRONOS	48
cicero	210
CIMICE	44
CINdex	62
circRNAprofiler	58
CircSeqAlignTk	41
cisPath	51
CiteFuse	87
ClassifyR	253
cleanUpdTSeq	90
cleaver	175
clevRvis	42
clippda	47
clipper	86
cliProfiler	44
cliqueMS	104
Clomial	49
Clonality	27
clonotypeR	8
clst	80
clstutils	49
CluMSID	56
clustComp	56
clusterExperiment	343
ClusterFoldSimilarity	2
ClusterJudge	51
clusterProfiler	16812
clusterSeq	28
ClusterSignificance	53
clusterStab	68
clustifyr	127
ClustIRR	18
CMA	101
cmapR	385
CNAnorm	50
CNEr	2951
cn.farms	51
cn.mops	240
CNORdt	48
CNORfeeder	51
CNORfuzzy	50
CNORode	72
CNPBayes	3
CNTools	118
CNVfilteR	47
CNVgears	33
cnvGSA	52
CNViz	44
CNVMetrics	42
CNVPanelizer	54
CNVRanger	113
CNVrd2	45
CNVtools	5
cobindR	5
CoCiteStats	41
COCOA	53
codelink	60
CODEX	96
coexnet	10
CoGAPS	226
cogena	77
cogeqc	60
Cogito	41
coGPS	50
COHCAP	60
cola	121
comapr	51
combi	49
coMET	83
coMethDMR	46
compartmap	33
COMPASS	61
compcodeR	71
compEpiTools	58
CompGO	5
ComplexHeatmap	13374
CompoundDb	332
ComPrAn	43
compSPOT	15
conclus	7
concordexR	59
condcomp	1
condiments	73
CONFESS	46
consensus	50
ConsensusClusterPlus	2893
consensusDE	53
consensusOV	89
consensusSeekeR	93
consICA	102
CONSTANd	50
contiBAIT	44
conumee	142
convert	134
copa	45
COPDSexualDimorphism	1
copynumber	160
CopyNumber450k	2
CopyNumberPlots	135
CopywriteR	22
coRdon	162
CoRegFlux	1
CoRegNet	50
CoreGx	319
Cormotif	44
CorMut	5
coRNAi	5
corral	69
CORREP	53
coseq	101
CoSIA	42
cosmiq	45
cosmo	2
cosmoGUI	2
cosmosR	64
COSNet	54
COTAN	67
CountClust	6
countsimQC	137
covEB	42
CoverageView	58
covRNA	45
cpvSNP	47
cqn	262
CRImage	61
CRISPRball	2
crisprBase	136
crisprBowtie	129
crisprBwa	55
crisprDesign	109
crisprScore	140
CRISPRseek	134
crisprseekplus	27
crisprShiny	0
CrispRVariants	131
crisprVerse	56
crisprViz	97
crlmm	213
CrossICC	1
crossmeta	123
CSAR	68
csaw	534
csdR	42
CSSP	35
CSSQ	41
ctc	265
CTdata	40
CTDquerier	44
CTexploreR	1
ctgGEM	3
cTRAP	50
ctsGE	46
CTSV	44
cummeRbund	223
CuratedAtlasQueryR	27
customCMPdb	45
customProDB	65
CVE	3
cyanoFilter	40
cycle	42
cydar	73
CytoDx	55
cytofast	4
cytofkit	22
CyTOFpower	45
cytofQC	39
CytoGLMM	85
cytoKernel	39
cytolib	2662
cytomapper	282
cytoMEM	82
CytoML	465
CytoPipeline	76
CytoPipelineGUI	16
CytoTree	16
cytoviewer	77
dada2	2150
dagLogo	61
daMA	53
DAMEfinder	48
DaMiRseq	96
DAPAR	115
dar	1
DART	59
DASC	0
DASiR	3
dasper	24
DAVIDQuery	3
DBChIP	8
dcanr	113
DCATS	26
dce	57
dcGSA	45
DChIPRep	4
ddCt	83
ddgraph	4
ddPCRclust	55
dearseq	166
debCAM	57
debrowser	167
DECIPHER	2663
deco	8
DEComplexDisease	9
decompTumor2Sig	110
DeconRNASeq	205
decontam	1583
decontX	61
deconvR	54
decoupleR	958
DEDS	6
DeepBlueR	47
DeepPINCS	74
deepSNV	138
DEFormats	251
DegNorm	51
DEGraph	53
DEGreport	548
DEGseq	153
DelayedArray	42740
DelayedDataFrame	52
DelayedMatrixStats	15694
DelayedRandomArray	79
DelayedTensor	40
DELocal	39
deltaCaptureC	45
deltaGseg	47
DeMAND	52
DeMixT	87
demuxmix	201
demuxSNP	25
densvis	3240
DEP	464
DepecheR	161
DepInfeR	41
DeProViR	1
DEqMS	208
derfinder	552
derfinderHelper	551
derfinderPlot	132
DEScan2	52
DESeq	240
DESeq2	20669
DEsingle	247
DESpace	43
destiny	684
DEsubs	51
DEWSeq	53
DExMA	56
DEXSeq	1446
dexus	8
DFP	43
DIAlignR	49
DiffBind	1008
diffcoexp	155
diffcyt	302
DifferentialRegulation	44
diffGeneAnalysis	47
diffHic	95
DiffLogo	64
diffloop	28
diffuStats	58
diffUTR	39
diggit	45
Dino	47
Director	45
dir.expiry	4069
DirichletMultinomial	4198
discordant	73
DiscoRhythm	55
distinct	203
dittoSeq	1248
divergence	37
dks	46
DMCFB	35
DMCHMM	44
DMRcaller	71
DMRcate	818
DMRforPairs	28
DMRScan	40
dmrseq	181
DNABarcodeCompatibility	40
DNABarcodes	171
DNAcopy	5192
DNAfusion	41
DNaseR	2
DNAshapeR	68
domainsignatures	4
DominoEffect	45
doppelgangR	109
DOQTL	5
Doscheda	47
DOSE	16507
doseR	40
doubletrouble	48
dpeak	27
drawProteins	179
dreamlet	28
DRIMSeq	312
DriverNet	53
DropletUtils	2611
drugTargetInteractions	53
DrugVsDisease	85
dSimer	3
DSS	974
dStruct	39
DTA	82
dualKS	7
Dune	42
DupChecker	2
dupRadar	97
dyebias	45
DynDoc	1225
easier	129
EasyCellType	45
easylift	19
EasyqpcR	7
easyreporting	51
easyRNASeq	154
EBarrays	201
EBcoexpress	64
EBImage	2615
EBSEA	45
EBSeq	414
EBSeqHMM	53
ecolitk	46
EDASeq	1718
edd	2
EDDA	5
edge	89
edgeR	22283
EDIRquery	33
eds	317
eegc	74
EGAD	55
EGSEA	130
eiR	51
eisa	7
eisaR	96
ELBOW	5
ELMER	164
EMDomics	59
EmpiricalBrownsMethod	124
ENCODExplorer	4
EnhancedVolcano	4087
enhancerHomologSearch	46
EnMCB	43
ENmix	185
EnrichedHeatmap	550
EnrichmentBrowser	545
enrichplot	17118
enrichTF	70
enrichViewNet	22
ensembldb	9709
ensemblVEP	146
ENVISIONQuery	4
epialleleR	49
EpiCompare	46
epidecodeR	40
EpiDISH	523
epigenomix	45
epigraHMM	46
epihet	8
EpiMix	40
epimutacions	49
epiNEM	117
epistack	45
epistasisGA	36
EpiTxDb	71
epivizr	81
epivizrChart	42
epivizrData	96
epivizrServer	123
epivizrStandalone	50
erccdashboard	56
erma	82
ERSSA	45
esATAC	82
escape	307
escheR	96
esetVis	67
eudysbiome	40
evaluomeR	47
EventPointer	51
EWCE	132
ExCluster	40
ExiMiR	47
exomeCopy	274
exomePeak	11
exomePeak2	99
exonmap	2
ExperimentHub	7156
ExperimentHubData	276
ExperimentSubset	44
explorase	7
ExploreModelMatrix	141
ExpressionAtlas	157
ExpressionView	6
exprExternal	0
externalVector	1
extraChIPs	50
fabia	166
facopy	2
factDesign	44
factR	45
faers	1
FamAgg	61
famat	46
farms	47
fastLiquidAssociation	45
FastqCleaner	76
fastreeR	66
fastseg	728
fbat	2
FCBF	53
fCCAC	43
fCI	50
fcoex	83
fcScan	44
fdrame	50
FEAST	100
FeatSeekR	39
fedup	43
FELLA	121
FEM	19
fenr	19
ffpe	56
fgga	40
FGNet	106
fgsea	16038
FilterFFPE	39
FindIT2	50
FindMyFriends	6
FISHalyseR	42
fishpond	284
FitHiC	62
flagme	44
FLAMES	63
flipflop	5
flowAI	542
flowBeads	47
flowBin	49
flowcatchR	47
flowCHIC	48
flowCL	11
flowClean	208
flowClust	817
flowCore	2655
flowCut	88
flowCyBar	49
flowDensity	229
flowFit	7
flowFlowJo	4
flowFP	125
flowGate	55
flowGraph	52
flowMap	43
flowMatch	53
flowMeans	138
flowMerge	112
flowPeaks	161
flowPhyto	2
flowPloidy	55
flowPlots	43
flowQ	4
flowQB	6
FlowRepositoryR	5
FlowSOM	1032
flowSpecs	58
flowSpy	2
flowStats	515
flowTime	53
flowTrans	65
flowType	8
flowUtils	35
flowViz	995
flowVS	90
flowWorkspace	1227
fmcsR	245
fmrs	119
fobitools	43
focalCall	3
FoldGO	30
FourCSeq	6
FRASER	100
frenchFISH	42
FRGEpistasis	52
frma	136
frmaTools	59
FScanR	29
FunChIP	58
FunciSNP	6
funtooNorm	46
FuseSOM	47
GA4GHclient	90
GA4GHshiny	48
gaga	88
gage	812
gaggle	41
gaia	22
GAPGOM	5
GAprediction	51
garfield	53
GARS	43
GateFinder	45
gatom	21
gaucho	4
GBScleanR	38
gcapc	49
gcatest	44
gCMAP	7
gCMAPWeb	6
gCrisprTools	49
gcrma	1371
GCSConnection	3
GCSFilesystem	3
GCSscore	27
GDCRNATools	283
gDNAx	28
gDR	19
gDRcore	58
gDRimport	58
gDRstyle	49
gDRutils	74
GDSArray	114
gdsfmt	2086
geecc	4
GEM	54
gemini	53
gemma.R	51
genArise	51
genbankr	136
gene2pathway	2
GeneAccord	8
GeneAnswers	17
geneAttribution	44
GeneBreak	54
geneClassifiers	42
GENE.E	5
GeneExpressionSignature	53
genefilter	13028
genefu	394
GeneGA	40
GeneGeneInteR	46
GeneGroupAnalysis	2
GeneMeta	85
GeneNetworkBuilder	58
GeneOverlap	375
geneplast	82
geneplotter	8555
GeneR	3
geneRecommender	43
GeneRegionScan	48
GeneRfold	1
geneRxCluster	44
GeneSelectMMD	89
GeneSelector	6
GENESIS	324
GeneSpring	2
GeneStructureTools	68
geNetClassifier	125
GeneticsBase	2
GeneticsDesign	5
GeneticsPed	95
GeneTonic	233
GeneTraffic	2
GeneTS	1
geneXtendeR	100
GENIE3	1145
genoCN	49
GenoGAM	5
genomation	602
GenomAutomorphism	36
GenomeBase	0
GenomeGraphs	11
GenomeInfoDb	54764
genomeIntervals	156
genomes	60
GenomicAlignments	23305
GenomicDataCommons	1208
GenomicDistributions	82
GenomicFeatures	19163
GenomicFiles	1220
genomicInstability	43
GenomicInteractionNodes	41
GenomicInteractions	325
GenomicOZone	48
GenomicPlot	24
GenomicRanges	40561
GenomicScores	598
GenomicSuperSignature	49
GenomicTuples	39
Genominator	7
genoset	13
genotypeeval	13
GenoView	1
genphen	5
GenProSeq	35
GenRank	3
GenVisR	307
GeoDiff	73
GEOexplorer	54
GEOfastq	63
GEOmetadb	218
GeomxTools	374
GEOquery	8809
GEOsearch	2
GEOsubmission	43
GeoTcgaData	57
gep2pep	50
gespeR	68
getDEE2	44
geva	46
GEWIST	44
gff3Plotter	1
gg4way	19
GGBase	9
ggbio	2111
ggcyto	882
ggkegg	100
ggmanh	99
ggmsa	486
GGPA	39
ggsc	27
ggspavis	121
GGtools	10
ggtree	19332
ggtreeDendro	52
ggtreeExtra	975
GIGSEA	49
girafe	78
GISPA	45
GLAD	220
GladiaTOX	39
Glimma	1224
glmGamPoi	3528
glmSparseNet	135
GlobalAncova	971
globalSeq	50
globaltest	1732
GloScope	17
gmapR	145
GmicR	55
gmoviz	45
GMRP	42
GNET2	46
GNOSIS	19
goCluster	0
GOexpress	80
GOfuncR	281
GOFunction	6
GoogleGenomics	3
GOpro	111
goProfiles	107
GOSemSim	16076
goseq	1203
GOSim	120
goSorensen	40
goSTAG	51
GOstats	1695
GOsummaries	57
GOTHiC	73
goTools	54
GPA	51
gpart	12
gpls	163
gprege	6
gpuMagic	44
gQTLBase	7
gQTLstats	6
gramm4R	2
GRaNIE	107
granulator	124
graper	48
graph	18066
GraphAlignment	52
GraphAT	45
graphite	2855
GraphPAC	76
GRENITS	52
GreyListChIP	935
GRmetrics	75
groHMM	60
GRridge	15
GSALightning	53
GSAR	87
GSCA	48
gscreend	41
GSEABase	8379
GSEABenchmarkeR	73
GSEAlm	65
GSEAmining	65
gsean	49
GSgalgoR	49
GSReg	50
GSRI	46
GSVA	5477
gtrellis	117
GUIDEseq	63
Guitar	131
Gviz	3852
GWAS.BAYES	48
gwascat	574
GWASTools	574
gwasurvivr	71
GWENA	170
gypsum	38
h5vc	66
hapFabia	44
Harman	167
HarmonizR	24
Harshlight	52
hca	58
HCABrowser	2
HCAExplorer	2
HCAMatrixBrowser	1
HCsnip	4
HDF5Array	12040
HDTD	49
heatmaps	237
Heatplus	377
HelloRanges	115
HELP	48
HEM	42
hermes	91
HERON	17
Herper	161
hexbin	20
HGC	60
hiAnnotator	96
HIBAG	126
HiCBricks	129
HiCcompare	269
HiCDCPlus	67
HiCDOC	93
HiCExperiment	120
HiContacts	93
HiCool	51
hicrep	8
hicVennDiagram	20
hierGWAS	55
hierinf	44
HilbertCurve	75
HilbertVis	166
HilbertVisGUI	29
HiLDA	61
hipathia	119
HIPPO	43
hiReadsProcessor	49
HIREewas	48
HiTC	130
hmdbQuery	66
HMMcopy	277
hoodscanR	21
hopach	278
HPAanalyze	121
hpar	266
HPAStainR	23
HPiP	50
HTqPCR	159
HTSanalyzeR	7
HTSeqGenie	45
htSeqTools	7
HTSFilter	211
HubPub	105
HumanTranscriptomeCompendium	47
hummingbird	40
HybridMTest	114
hypeR	71
hyperdraw	97
hypergraph	134
iASeq	47
iasva	43
iBBiG	119
ibh	54
iBMQ	37
iCARE	99
Icens	422
icetea	42
iCheck	42
iChip	40
iClusterPlus	325
iCNV	45
iCOBRA	160
ideal	105
IdeoViz	61
idiogram	47
IdMappingAnalysis	5
IdMappingRetrieval	5
idpr	59
idr2d	46
IFAA	45
iFlow	2
iGC	49
IgGeneUsage	42
igvR	99
igvShiny	2
IHW	681
illuminaio	2833
ILoReg	39
imageHTS	15
IMAS	46
imcRtools	166
Imetagene	3
IMMAN	43
ImmuneSpaceR	54
immunoClust	52
immunotation	48
IMPCdata	46
ImpulseDE	3
ImpulseDE2	9
impute	10160
INDEED	47
iNETgrate	26
infercnv	1070
infinityFlow	57
Informeasure	39
InPAS	47
INPower	51
inSilicoDb	8
inSilicoMerging	8
INSPEcT	61
INTACT	39
InTAD	44
intansv	60
interacCircos	61
InteractionSet	1756
InteractiveComplexHeatmap	359
interactiveDisplay	86
interactiveDisplayBase	10115
InterCellar	71
IntEREst	53
InterMineR	55
IntOMICS	36
IntramiRExploreR	41
inveRsion	7
IONiseR	59
iontree	4
iPAC	101
iPath	39
ipdDb	96
IPO	114
IPPD	6
IRanges	49607
IRISFGM	81
IrisSpatialFeatures	1
ISAnalytics	47
iSEE	425
iSEEde	28
iSEEhex	127
iSEEhub	95
iSEEindex	25
iSEEpathways	21
iSEEu	96
iSeq	48
ISLET	43
iSNetwork	1
isobar	70
IsoBayes	16
IsoCorrectoR	95
IsoCorrectoRGUI	49
IsoformSwitchAnalyzeR	243
IsoGeneGUI	7
ISoLDE	45
isomiRs	115
iSPlot	1
ITALICS	48
iterativeBMA	46
iterativeBMAsurv	48
iterClust	45
iteremoval	5
IVAS	70
ivygapSE	40
IWTomics	43
jmosaics	3
joda	5
JunctionSeq	8
karyoploteR	857
katdetectr	45
KBoost	47
KCsmart	48
kebabs	136
KEGGgraph	5452
KEGGlincs	57
keggorth	1
keggorthology	129
KEGGprofile	14
KEGGREST	34764
KEGGSOAP	4
kimod	3
KinSwingR	47
kissDE	44
KnowSeq	48
LACE	103
lapmix	39
LBE	250
ldblock	67
LEA	511
LedPred	46
lefser	568
lemur	31
les	88
levi	48
lfa	288
limma	31376
limmaGUI	57
LINC	3
LineagePulse	42
lineagespot	38
LinkHD	45
Linnorm	197
LinTInd	44
lionessR	47
lipidr	178
LiquidAssociation	69
lisaClust	120
lmdme	42
LMGene	6
LOBSTAHS	48
loci2path	40
logicFS	79
logitT	30
Logolas	5
lol	4
LOLA	264
LoomExperiment	584
LowMACA	15
LPE	82
LPEadj	39
lpNet	55
lpsymphony	1175
LRBaseDbi	105
LRcell	49
lumi	1123
lute	2
LVSmiRNA	6
LymphoSeq	53
M3C	727
M3D	4
M3Drop	547
m6Aboost	37
maanova	14
Maaslin2	936
Macarron	42
macat	50
maCorrPlot	48
MACPET	5
MACSQuantifyR	44
MACSr	102
maDB	3
made4	228
MADSEQ	42
maftools	2590
MAGAR	129
MAGeCKFlute	347
magpie	38
magrene	39
MAI	48
maigesPack	37
MAIT	50
makecdfenv	150
makePlatformDesign	1
MANOR	45
manta	7
MantelCorr	45
mAPKL	10
maPredictDSC	44
mapscape	51
mariner	49
marr	39
marray	1813
martini	47
maser	113
maSigPro	242
maskBAD	46
MassArray	49
massiR	47
MassSpecWavelet	1810
MAST	2005
mastR	96
matchBox	48
matchprobes	2
MatrixGenerics	38558
MatrixQCvis	113
MatrixRider	48
matter	190
MaxContrastProjection	4
MBAmethyl	42
MBASED	51
MBCB	41
MBECS	53
mbkmeans	441
mbOmic	20
mBPCR	46
MBQN	41
mbQTL	39
MBttest	49
mcaGUI	6
MCbiclust	42
MCRestimate	5
mCSEA	95
mdgsa	6
mdp	55
mdqc	95
MDTS	45
MEAL	70
MeasurementError.cor	46
MEAT	37
MEB	41
MEDIPS	95
MEDME	44
megadepth	120
MEIGOR	42
Melissa	42
memes	175
MergeMaid	8
Mergeomics	60
MeSHDbi	227
meshes	134
meshr	118
MeSHSim	1
MesKit	61
messina	51
metaArray	6
Metab	29
metabCombiner	43
metabinR	43
MetaboAnnotation	301
MetaboCoreUtils	1046
metabolomicsWorkbenchR	69
metabomxtr	46
MetaboSignal	103
metaCCA	203
MetaCyto	58
metagene	35
metagene2	60
metagenomeFeatures	4
metagenomeSeq	1571
metahdep	54
metaMS	90
MetaNeighbor	85
MetaPhOR	43
metapod	4479
metapone	57
metaSeq	57
metaseqR	8
metaseqR2	36
metavizr	10
MetaVolcanoR	58
metaX	2
MetCirc	55
MethCP	8
methimpute	48
methInheritSim	53
methodical	1
MethPed	44
MethReg	65
methrix	70
MethTargetedNGS	43
methVisual	6
methyAnalysis	11
MethylAid	74
methylCC	61
methylclock	136
methylGSA	97
methylInheritance	55
methylKit	617
MethylMix	89
methylMnM	62
methylPipe	103
methylscaper	43
MethylSeekR	128
methylSig	58
methylumi	1414
methyvim	5
MetID	48
MetNet	46
mfa	75
Mfuzz	1101
MGFM	50
MGFR	52
mgsa	103
mia	1396
miaSim	92
miaViz	216
MiChip	42
microbiome	1597
microbiomeDASim	47
microbiomeExplorer	67
microbiomeMarker	358
MicrobiomeProfiler	93
MicrobiotaProcess	465
microRNA	146
microSTASIS	40
MICSQTL	23
midasHLA	53
MIGSA	11
miloR	249
mimager	49
MIMOSA	29
mina	42
MineICA	59
minet	711
minfi	2235
MinimumDistance	47
MiPP	42
miQC	98
MIRA	106
MiRaGE	47
miRBaseConverter	126
miRcomp	45
mirIntegrator	51
MIRit	0
miRLAB	49
miRmine	29
miRNAmeConverter	49
miRNApath	61
miRNAtap	134
miRSM	30
miRsponge	2
miRspongeR	44
Mirsynergy	4
mirTarRnaSeq	61
missMethyl	975
missRows	45
mistyR	94
mitch	65
mitoClone2	45
mitoODE	3
mixOmics	2947
MLInterfaces	357
mlm4omics	1
MLP	109
MLSeq	136
MMAPPR2	21
MMDiff	4
MMDiff2	43
mmgmos	1
mmnet	3
MmPalateMiRNA	5
MMUPHin	93
mnem	125
moanin	117
mobileRNA	1
MobilityTransformR	35
MODA	46
ModCon	43
Modstrings	179
MOFA	5
MOFA2	425
MOGAMUN	44
mogsa	152
MoleculeExperiment	50
MOMA	53
monaLisa	104
monocle	2921
Moonlight2R	23
MoonlightR	54
MoPS	4
mosaics	119
mosbi	43
MOSim	43
Motif2Site	41
motifbreakR	174
motifcounter	50
MotifDb	632
motifmatchr	1233
motifRG	7
motifStack	673
MotIV	24
MouseFM	93
MPFE	44
mpra	48
MPRAnalyze	59
MQmetrics	50
mQTL.NMR	3
msa	1482
MSA2dist	118
MsBackendMassbank	63
MsBackendMgf	454
MsBackendMsp	184
MsBackendRawFileReader	49
MsBackendSql	49
MsCoreUtils	3383
MsDataHub	45
MSEADbi	2
MsExperiment	703
MsFeatures	1584
msgbsR	56
MSGFgui	5
MSGFplus	10
msImpute	76
mslp	36
msmsEDA	256
msmsTests	240
MSnbase	3106
MSnID	230
MSPrep	98
msPurity	70
msqrob2	104
MsQuality	51
MSstats	478
MSstatsBig	16
MSstatsConvert	456
MSstatsLiP	57
MSstatsLOBD	48
MSstatsPTM	174
MSstatsQC	60
MSstatsQCgui	35
MSstatsSampleSize	24
MSstatsShiny	86
MSstatsTMT	253
MSstatsTMTPTM	2
MTseeker	2
MuData	49
Mulcom	64
MultiAssayExperiment	4720
MultiBaC	59
multiClust	57
multicrispr	46
MultiDataSet	1144
multiGSEA	104
multiHiCcompare	167
MultiMed	54
multiMiR	221
MultimodalExperiment	36
multiOmicsViz	40
MultiRNAflow	18
multiscan	42
multiSight	77
multiWGCNA	33
multtest	11981
mumosa	61
MungeSumstats	897
muscat	380
muscle	298
musicatk	66
MutationalPatterns	318
MVCClass	86
mvGST	2
MWASTools	130
mygene	350
myvariant	70
mzID	2956
mzR	3247
NADfinder	42
NanoMethViz	68
NanoStringDiff	86
NanoStringNCTools	362
NanoStringQCPro	48
nanotatoR	101
NanoTube	76
NarrowPeaks	6
NBAMSeq	77
NBSplice	9
ncdfFlow	1094
ncGTW	35
NCIgraph	97
ncRNAtools	41
ndexr	64
neaGUI	3
nearBynding	41
Nebulosa	944
NeighborNet	25
nem	10
nempi	45
NetActivity	43
netbenchmark	4
netbiov	34
netboost	36
netboxr	10
netDx	46
nethet	43
netOmics	42
NetPathMiner	59
netprioR	48
netReg	3
netresponse	54
NetSAM	48
netSmooth	61
networkBMA	7
netZooR	52
NeuCA	30
NewWave	99
NGScopy	3
ngsReports	71
nipalsMCIA	19
nnNorm	46
nnSVG	80
NOISeq	559
nondetects	58
NoRCE	45
normalize450K	40
NormalyzerDE	132
NormqPCR	168
normr	127
NPARC	49
npGSEA	54
NTW	49
nucleoSim	48
nucleR	66
nuCpos	49
nudge	3
nullranges	145
NuPoP	64
NxtIRFcore	23
occugene	44
OCplus	71
octad	42
ODER	19
odseq	61
OGRE	48
OGSA	3
oligo	1606
oligoClasses	1669
OLIN	74
OLINgui	42
omada	33
OmaDB	188
omicade4	126
OmicCircos	176
omicplotR	52
omicRexposome	46
OmicsLonDA	24
OmicsMarkeR	4
OMICsPCA	50
omicsPrint	45
omicsViewer	47
Omixer	51
OmnipathR	502
ompBAM	93
Onassis	5
oncomix	42
oncoscanR	37
OncoScore	46
OncoSimulR	52
oneChannelGUI	6
oneSENSE	16
onlineFDR	47
ontoCAT	5
ontoProc	208
ontoTools	1
openCyto	656
openPrimeR	116
openPrimeRui	53
OpenStats	46
OperaMate	2
oposSOM	62
oppar	48
oppti	38
optimalFlow	47
OPWeight	44
OrderedList	72
ORFhunteR	44
ORFik	189
OrganismDbi	3183
Organism.dplyr	410
orthogene	311
orthos	19
OSAT	59
Oscope	80
OTUbase	48
OutlierD	7
OUTRIDER	189
OutSplice	34
OVESEG	41
PAA	57
packFinder	44
padma	44
PADOG	218
pageRank	46
PAIRADISE	79
paircompviz	46
pairedGSEA	32
pairkat	37
pairseqsim	1
pamr	5
pandaR	118
panelcn.mops	72
PAnnBuilder	5
PanomiR	52
panp	42
PANR	44
PanViz	41
PanVizGenerator	6
PAPi	9
pareg	36
parglms	42
parody	90
partCNV	20
PAST	42
Path2PPI	59
pathifier	125
pathlinkR	2
PathNet	61
PathoStat	58
pathprint	4
pathRender	46
pathVar	32
pathview	4267
pathwayPCA	75
PathwaySplice	3
PatientGeneSets	1
paxtoolsr	88
Pbase	4
pbcmc	2
pcaExplorer	454
pcaGoPromoter	7
pcaMethods	4975
PCAN	48
PCAtools	1136
pcot2	7
PCpheno	6
pcxn	45
PDATK	72
pdInfoBuilder	101
pdmclass	5
PeacoQC	191
peakPantheR	51
PECA	49
peco	41
Pedixplorer	1
pengls	36
PepsNMR	115
pepStat	43
pepXMLTab	60
PERFect	39
periodicDNA	44
perturbatr	4
pfamAnalyzeR	203
PFP	21
PGA	5
pgca	47
PGSEA	40
pgUtils	2
pgxRpi	2
phantasus	142
phantasusLite	19
PharmacoGx	241
phemd	37
phenoDist	4
PhenoGeneRanker	44
phenomis	48
phenopath	83
phenoTest	114
PhenStat	46
philr	181
PhIPData	88
phosphonormalizer	47
PhosR	98
PhyloProfile	61
phyloseq	5261
Pi	71
piano	423
pickgene	48
PICS	99
Pigengene	103
PING	53
pint	4
pipeComp	44
pipeFrame	156
PIPETS	1
pkgDepTools	16
planet	173
planttfhunter	35
plasmut	15
plateCore	6
plethy	15
plgem	100
plier	105
PloGO2	63
plotgardener	323
plotGrouper	49
PLPE	44
plrs	6
PLSDAbatch	2
plw	5
plyinteractions	24
plyranges	1186
pmm	44
pmp	112
PoDCall	49
podkat	47
pogos	54
polyester	115
Polyfit	4
POMA	70
POST	4
PoTRA	5
PowerExplorer	4
powerTCR	387
POWSC	50
ppcseq	43
PPInfer	109
ppiStats	6
pqsfinder	68
prada	13
pram	39
prebs	53
preciseTAD	44
PrecisionTrialDrawer	4
PREDA	74
predictionet	7
preprocessCore	14032
primirTSS	49
PrInCE	48
Prize	3
proActiv	57
proBAMr	46
proBatch	39
PROcess	77
procoil	48
ProCoNA	4
proDA	211
proFIA	10
profileplyr	209
profileScoreDist	40
progeny	383
projectR	94
pRoloc	239
pRolocGUI	74
PROMISE	89
PROPER	73
PROPS	41
Prostar	65
prot2D	5
proteasy	30
proteinProfiles	46
ProteoDisco	42
ProteomicsAnnotationHubData	5
ProteoMM	70
proteoQC	4
protGear	45
ProtGenerics	11373
PSEA	43
psichomics	64
PSICQUIC	12
PSMatch	165
psygenet2r	56
ptairMS	39
PubScore	3
pulsedSilac	4
puma	88
PureCN	148
pvac	41
pvca	238
Pviz	68
PWMEnrich	147
pwOmics	96
pwrEWAS	35
qckitfastq	54
qcmetrics	72
QDNAseq	358
QFeatures	1183
qmtools	44
qpcrNorm	48
qpgraph	161
qPLEXanalyzer	62
qrqc	25
qsea	57
qsmooth	120
QSutils	45
qsvaR	104
QTLExperiment	17
Qtlizer	42
QUALIFIER	5
quantiseqr	440
quantro	318
quantsmooth	611
QuartPAC	47
QuasR	335
QuaternaryProd	72
QUBIC	136
qusage	377
qvalue	16464
R3CPET	47
r3Cseq	78
R453Plus1Toolbox	49
R4RNA	606
RadioGx	52
raer	18
RaggedExperiment	909
RAIDS	14
rain	82
rama	18
RamiGO	5
ramr	39
ramwas	122
RandomWalkRestartMH	113
randPack	44
randRotation	44
RankProd	281
RAREsim	43
RareVariantVis	48
Rariant	5
Rarr	109
rawrr	202
RbcBook1	66
Rbec	45
RBGL	9350
RBioFormats	89
RBioinf	51
rBiopaxParser	159
RBM	49
Rbowtie	475
Rbowtie2	304
rbsurv	50
Rbwa	103
Rcade	13
RCAS	105
RCASPAR	46
rcellminer	57
rCGH	91
Rchemcpp	5
RchyOptimyx	6
RcisTarget	859
RCM	48
Rcollectl	26
Rcpi	106
RCSL	34
Rcwl	86
RcwlPipelines	77
RCX	91
RCy3	864
RCyjs	64
RCytoscape	7
RDAVIDWebService	25
Rdbi	2
RdbiPgSQL	1
rDGIdb	79
Rdisop	465
RDRToolbox	118
ReactomeContentService4R	98
ReactomeGraph4R	37
ReactomeGSA	224
ReactomePA	2266
readat	5
ReadqPCR	196
reb	6
REBET	39
rebook	196
receptLoss	35
reconsi	41
recount	411
recount3	298
recountmethylation	49
recoup	45
RedeR	313
RedisParam	37
REDseq	69
RefNet	5
RefPlus	36
RegEnrich	94
regionalpcs	20
RegionalST	24
regioneR	1998
regioneReloaded	39
regionReport	107
regsplice	38
regutools	51
REMP	53
Repitools	312
ReportingTools	711
reposTools	0
RepViz	97
ReQON	41
ResidualMatrix	3357
RESOLVE	47
Resourcerer	3
restfulSE	111
retrofit	36
ReUseData	30
rexposome	94
rfaRm	35
Rfastp	132
rflowcyt	2
rfPred	48
rGADEM	268
RGalaxy	8
rGenomeTracks	41
Rgin	4
RGMQL	34
RgnTX	36
rgoslin	66
RGraph2js	44
Rgraphviz	9701
rGREAT	631
RGSEA	58
rgsepd	45
rhdf5	19578
rhdf5client	123
rhdf5filters	18843
Rhdf5lib	22398
Rhisat2	207
Rhtslib	23368
rHVDM	5
RiboCrypt	40
RiboDiPA	45
RiboProfiling	70
ribor	42
riboSeqR	33
ribosomeProfilingQC	64
rifi	34
rifiComparative	30
RImmPort	47
Ringo	356
Rintact	1
RIPAT	28
RIPSeeker	17
Risa	51
RITAN	52
RIVER	41
RJMCMCNucleosomes	43
RLassoCox	52
RLMM	49
RLSeq	36
RMAGEML	2
Rmagpie	42
RMAPPER	3
RMassBank	87
rMAT	6
rmelting	65
RmiR	7
Rmmquant	42
rmspc	49
RNAAgeCalc	65
RNAdecay	38
rnaEditr	41
RNAinteract	64
RNAither	6
RNAmodR	96
RNAmodR.AlkAnilineSeq	47
RNAmodR.ML	39
RNAmodR.RiboMethSeq	43
RNAprobR	4
RNAsense	37
rnaseqcomp	60
RNAseqCovarImpute	15
rnaSeqMap	7
RNASeqPower	131
RNASeqR	9
RnaSeqSampleSize	86
RnBeads	261
Rnits	39
roar	48
roastgsa	16
ROC	1035
ROCpAI	37
RolDE	43
Roleswitch	5
Rolexa	4
rols	402
ROntoTools	186
ropls	1139
ROSeq	39
ROTS	196
RPA	78
rprimer	63
RProtoBufLib	2517
RpsiXML	10
rpx	241
Rqc	268
rqt	50
rqubic	70
rRDP	57
Rredland	1
RRHO	99
rrvgo	431
Rsamtools	22400
rsbml	137
rScudo	45
rsemmed	45
RSeqAn	85
rSFFreader	4
RSNPper	1
Rsubread	2248
RSVSim	52
rSWeeP	46
rTANDEM	8
RTCA	47
RTCGA	564
RTCGAToolbox	583
RTN	149
RTNduals	76
RTNsurvival	58
RTools4TB	1
RTopper	43
Rtpca	40
rtracklayer	20623
Rtreemix	45
rTRM	126
rTRMui	49
runibic	71
Ruuid	3
RUVcorr	50
RUVnormalize	60
RUVSeq	907
Rvisdiff	17
RVS	41
RWebServices	2
rWikiPathways	383
S4Arrays	30563
S4Vectors	53591
safe	586
SAGElyzer	1
sagenhaft	40
SAGx	10
SAIGEgds	56
samExploreR	4
sampleClassifier	47
SamSPECTRAL	132
sangeranalyseR	172
sangerseqR	862
SANTA	58
sapFinder	5
saps	2
SARC	18
sarks	37
saseR	2
satuRn	239
savR	34
SBGNview	154
sbgr	1
SBMLR	61
SC3	402
Scale4C	41
ScaledMatrix	11543
scAlign	16
scanMiR	65
scanMiRApp	49
scAnnotatR	121
SCAN.UPC	122
SCANVIS	56
SCArray	68
SCArray.sat	37
SCATE	82
scater	6584
scatterHatch	43
scBFA	47
SCBN	78
scBubbletree	42
scCB2	45
scClassifR	2
scClassify	77
sccomp	84
scDataviz	70
scDblFinder	1286
scDD	133
scDDboost	38
scde	331
scDesign3	26
scds	473
SCFA	40
scFeatureFilter	50
scFeatures	53
scfind	3
scGPS	50
schex	216
scHOT	62
scider	19
scifer	44
ScISI	11
scMAGeCK	15
scmap	263
scMerge	467
scMET	44
scmeth	58
scMitoMut	0
SCnorm	86
scone	94
Sconify	44
SCOPE	51
scoreInvHap	43
scp	119
scPCA	80
scPipe	125
scran	4559
scReClassify	40
scRecover	53
screenCounter	32
ScreenR	35
scRepertoire	359
scRNAseqApp	50
scruff	59
scry	215
scShapes	40
scsR	4
scTensor	112
scTGIF	129
scTHI	39
scTreeViz	41
scuttle	9578
scviR	39
SDAMS	46
sechm	144
segmenter	44
segmentSeq	42
selectKSigs	38
SELEX	46
SemDist	43
semisup	46
SemSim	1
SEPA	3
SEPIRA	25
seq2pathway	106
seqArchR	73
seqArchRplus	37
SeqArray	844
seqbias	70
seqCAT	42
seqCNA	50
seqcombo	52
SeqGate	36
SeqGSEA	122
seq.hotSPOT	32
seqLogo	3277
seqPattern	618
seqplots	7
seqsetvis	55
SeqSQC	81
seqTools	115
SeqVarTools	426
sesame	641
SEtools	121
sevenbridges	56
sevenC	43
SGCP	96
SGSeq	294
SharedObject	131
shinyepico	54
shiny.gosling	2
shinyMethyl	90
shinyTANDEM	6
ShortRead	6117
SIAMCAT	105
SICtools	39
sigaR	6
SigCheck	45
sigFeature	191
SigFuge	44
siggenes	3129
sights	46
signatureSearch	198
signeR	63
signet	3
signifinder	51
sigPathway	34
SigsPack	41
sigsquared	41
SIM	45
SIMAT	44
SimBindProfiles	45
SimBu	52
SIMD	40
SimFFPE	42
similaRpeak	59
SIMLR	247
simona	31
simpleaffy	97
simpleSeg	61
simplifyEnrichment	672
simulatorAPMS	2
simulatorZ	5
sincell	56
single	42
SingleCellExperiment	14419
SingleCellSignalR	242
singleCellTK	223
SingleMoleculeFootprinting	40
SingleR	3738
singscore	1230
SiPSiC	38
SISPA	30
sitadela	41
sitePath	47
sizepower	57
SJava	2
sketchR	0
skewr	34
slalom	99
SLGI	7
slingshot	1376
slinky	3
SLqPCR	57
SMAD	49
SMAP	46
SMITE	52
SNAGEE	51
snapCGH	90
snapcount	52
snifter	127
snm	164
SNPchip	13
SNPediaR	43
SNPhood	47
snpMatrix	8
SNPRelate	1572
snpStats	2202
soGGi	302
sojourner	9
SomatiCA	3
SomaticSignatures	162
SOMNiBUS	50
SpacePAC	74
spade	6
Spaniel	67
sparrow	119
SparseArray	17059
sparseDOSSA	42
sparseMatrixStats	14915
sparsenetgls	47
SparseSignatures	50
spaSim	48
SpatialCPie	68
spatialDE	94
SpatialDecon	169
SpatialExperiment	1394
SpatialFeatureExperiment	138
spatialHeatmap	140
SpatialOmicsOverlay	51
spatzie	39
speckle	124
specL	56
SpeCond	60
Spectra	1299
SpectralTAD	79
SPEM	60
SPIA	621
SPIAT	93
spicyR	166
SpidermiR	83
spikeLI	42
spiky	40
spillR	2
spkTools	39
splatter	426
splicegear	5
spliceR	7
spliceSites	5
SpliceWiz	73
SplicingFactory	37
SplicingGraphs	78
splineTCDiffExpr	0
splineTimeR	63
SPLINTER	46
splots	187
SPONGE	61
spoon	0
SpotClean	81
SPOTlight	204
spotSegmentation	4
spqn	46
SPsimSeq	127
SQLDataFrame	39
SQUADD	45
sRACIPE	56
SRAdb	367
sRAP	6
SRGnet	3
srnadiff	35
sscore	27
sscu	42
sSeq	158
ssize	84
sSNAPPY	102
SSPA	58
ssPATHS	36
ssrch	79
ssviz	50
stageR	180
stam	1
STAN	13
standR	97
staRank	46
StarBioTrek	50
Starr	6
STATegRa	49
Statial	55
statTarget	89
STdeconvolve	113
stepNorm	41
stepwiseCM	3
stJoincount	49
strandCheckR	44
Streamer	46
STRINGdb	1063
STROMA4	29
struct	141
Structstrings	136
structToolbox	96
StructuralVariantAnnotation	194
SubCellBarCode	44
subSeq	61
SUITOR	36
SummarizedBenchmark	48
SummarizedExperiment	36992
Summix	42
supersigs	43
supraHex	435
surfaltr	43
SurfR	0
survcomp	1024
survtype	46
Sushi	63
sva	6909
svaNUMT	48
SVAPLSseq	3
svaRetro	48
SVM2CRM	3
SVMDO	94
SWATH2stats	54
SwathXtend	62
swfdr	54
SwimR	3
switchBox	116
switchde	49
synapsis	37
synapter	76
synergyfinder	180
SynExtend	46
synlet	41
SynMut	40
syntenet	109
systemPipeR	1157
systemPipeShiny	58
systemPipeTools	48
tadar	21
TADCompare	75
tanggle	57
TAPseq	50
target	41
TargetDecoy	38
TargetScore	58
TargetSearch	65
TarSeqQC	11
TBSignatureProfiler	54
TCC	173
TCGAbiolinks	3304
TCGAbiolinksGUI	26
TCGAutils	838
TCseq	137
TDARACNE	10
TDbasedUFE	65
TDbasedUFEadv	48
TEKRABber	100
TENxIO	44
tenXplore	47
TEQC	55
ternarynet	43
terraTCGAdata	41
TFARM	39
TFBSTools	2923
TFEA.ChIP	59
TFHAZ	39
TFutils	71
tidybulk	187
tidyCoverage	1
tidyomics	0
tidySingleCellExperiment	179
tidySpatialExperiment	1
tidySummarizedExperiment	316
tigre	49
TileDBArray	42
tilingArray	117
timecourse	59
timeOmics	63
timescape	76
TimeSeriesExperiment	7
TimiRGeN	57
TIN	43
TissueEnrich	156
TitanCNA	67
tkWidgets	1219
tLOH	39
TMixClust	55
TNBC.CMS	50
TnT	41
TOAST	353
tofsims	4
tomoda	37
tomoseqr	38
TOP	34
ToPASeq	5
topconfects	169
topdownr	61
topGO	2980
ToxicoGx	53
TPP	83
TPP2D	45
tpSVG	0
tracktables	111
trackViewer	434
tradeSeq	473
TrajectoryGeometry	42
TrajectoryUtils	1744
transcriptogramer	55
transcriptR	56
transformGamPoi	60
transite	47
tRanslatome	106
transmogR	0
transomics2cytoscape	41
TransView	44
TraRe	7
traseR	42
Travel	4
traviz	49
TreeAndLeaf	119
treeio	19158
treekoR	44
TreeSummarizedExperiment	1413
TREG	43
trena	38
TReNA	0
Trendy	53
TRESS	88
tricycle	196
triform	7
trigger	46
trio	81
triplex	45
tripr	50
tRNA	124
tRNAdbImport	98
tRNAscanImport	66
TRONCO	63
TSAR	14
TSCAN	571
tscR	23
tspair	8
TSRchitect	6
TSSi	5
ttgsea	82
TTMap	38
TurboNorm	45
TVTB	49
tweeDEseq	121
twilight	100
twoddpcr	45
txcutr	38
tximeta	1132
tximport	3316
TxRegInfra	4
TypeInfo	46
UCell	1135
Ularcirc	50
UMI4Cats	50
uncoverappLib	45
UNDO	64
unifiedWMWqPCR	47
UniProt.ws	397
Uniquorn	44
universalmotif	451
updateObject	39
uSORT	39
VAExprs	39
VanillaICE	160
VarCon	41
variancePartition	859
VariantAnnotation	9158
VariantExperiment	47
VariantFiltering	66
VariantTools	150
vasp	2
VaSP	46
vbmp	67
VCFArray	48
VDJdive	42
Vega	3
VegaMC	44
velociraptor	108
veloviz	50
VennDetail	207
VERSO	48
vidger	95
viper	688
virtualArray	4
ViSEAGO	115
VisiumIO	1
vissE	93
Voyager	92
VplotR	54
vsclust	45
vsn	5074
vtpnet	56
vulcan	51
waddR	49
wateRmelon	728
wavClusteR	52
waveTiling	7
weaver	55
webbioc	50
weitrix	44
widgetInvoke	1
widgetTools	1228
wiggleplotr	158
wpm	48
wppi	42
Wrench	1560
XBSeq	5
XCIR	3
xcms	1716
xcore	44
XDE	47
Xeva	47
XINA	40
xmapbridge	49
xmapcore	2
XNAString	43
xps	8
XVector	46191
y2hStat	0
yamss	52
YAPSA	67
yaqcaffy	7
yarn	126
zellkonverter	999
zenith	124
zFPKM	103
zinbwave	846
zlibbioc	47997
ZygosityPredictor	34