Package	Download_score
a4	86
a4Base	138
a4Classif	115
a4Core	162
a4Preproc	180
a4Reporting	117
ABAEnrichment	11
ABarray	75
abseqR	57
ABSSeq	116
acde	64
ACE	87
aCGH	214
ACME	87
ADaCGH2	72
ADAM	114
ADAMgui	90
adaptest	5
adductomicsR	54
ADImpute	72
adSplit	70
adverSCarial	30
AffiXcan	55
affxparser	1576
affy	8510
affycomp	97
AffyCompatible	24
affyContam	100
affycoretools	398
AffyExpress	14
affyILM	67
affyio	8354
affylmGUI	84
affyPara	15
affypdnn	14
affyPLM	1192
affyQCReport	19
AffyRNADegradation	62
AffyTiling	8
AGDEX	65
aggregateBioVar	70
Agi4x44PreProcess	4
agilp	91
AgiMicroRna	135
AHMassBank	51
AIMS	426
airpart	57
alabaster	43
alabaster.base	484
alabaster.bumpy	83
alabaster.files	35
alabaster.mae	88
alabaster.matrix	442
alabaster.ranges	435
alabaster.sce	215
alabaster.schemas	468
alabaster.se	443
alabaster.spatial	84
alabaster.string	100
alabaster.vcf	85
ALDEx2	1174
alevinQC	84
AllelicImbalance	102
AlphaBeta	56
AlphaMissenseR	14
alpine	44
ALPS	4
AlpsNMR	65
alsace	16
altcdfenvs	116
AMARETTO	118
AMOUNTAIN	93
amplican	80
ampliQueso	11
AnalysisPageServer	7
anamiR	8
Anaquin	57
ANCOMBC	1223
AneuFinder	85
ANF	51
animalcules	109
annaffy	275
AnnBuilder	1
annmap	115
annotate	18003
AnnotationDbi	36496
AnnotationFilter	10373
AnnotationForge	2476
AnnotationFuncs	18
AnnotationHub	11139
AnnotationHubData	369
annotationTools	129
annotatr	474
anota	85
anota2seq	75
antiProfiles	62
AnVIL	587
AnVILBilling	51
AnVILPublish	52
AnVILWorkflow	42
APAlyzer	69
apComplex	65
apeglm	3388
APL	117
applera	0
appreci8R	99
aroma.light	1953
ArrayExpress	423
ArrayExpressHTS	16
arrayMagic	2
arrayMvout	61
arrayQCplot	1
arrayQuality	98
arrayQualityMetrics	495
ArrayTools	17
ArrayTV	14
ARRmNormalization	57
artMS	79
ASAFE	49
ASEB	57
ASGSCA	59
ASICS	82
asmn	3
ASpediaFI	7
ASpli	102
AssessORF	55
ASSET	105
ASSIGN	108
ASURAT	62
ATACCoGAPS	45
ATACseqQC	343
ATACseqTFEA	62
atena	110
AtlasRDF	8
atSNP	70
attract	73
AUCell	2174
autonomics	50
Autotuner	6
AWFisher	59
awst	50
BaalChIP	59
BAC	16
bacon	104
BADER	63
BadRegionFinder	56
BAGS	59
ballgown	640
bambu	280
bamsignals	1114
BANDITS	108
bandle	59
Banksy	25
banocc	73
barcodetrackR	54
basecallQC	66
BaseSpaceR	64
Basic4Cseq	64
BASiCS	167
BASiCStan	55
BasicSTARRseq	55
basilisk	4624
basilisk.utils	4178
batchelor	3811
BatchQC	106
BayesKnockdown	55
BayesPeak	16
BayesSpace	224
bayNorm	80
baySeq	417
BBCAnalyzer	57
BCRANK	70
bcSeq	60
BDMMAcorrect	34
beachmat	15137
beachmat.hdf5	49
beadarray	699
beadarraySNP	55
BeadDataPackR	659
BeadExplorer	1
BEARscc	54
BEAT	60
BEclear	70
beer	54
benchdamic	85
BERT	10
betaHMM	9
betr	9
bettr	8
BG2	43
bgafun	12
BgeeCall	48
BgeeDB	117
BGmix	24
bgx	65
BHC	85
BicARE	134
BiFET	57
BiGGR	68
bigmelon	62
bigmemoryExtras	14
bigPint	37
bim	1
BindingSiteFinder	56
bioassayR	75
Biobase	47200
biobroom	190
biobtreeR	51
bioCancer	72
BioCartaImage	30
BiocBaseUtils	5455
BiocBook	38
BiocCaseStudies	15
BiocCheck	1642
biocDatasets	1
BiocDockerManager	20
BiocFHIR	46
BiocFileCache	25920
BiocGenerics	55426
biocGraph	162
BiocHail	39
BiocHubsShiny	78
BiocInstaller	466
BiocIO	19281
BiocNeighbors	10226
BiocOncoTK	76
BioCor	81
BiocParallel	41612
BiocPkgTools	164
biocroxytest	20
BiocSet	241
BiocSingular	11901
BiocSklearn	71
BiocStyle	6375
biocthis	222
BiocVersion	58435
biocViews	4218
BiocWorkflowTools	178
biodb	195
biodbChebi	82
biodbExpasy	47
biodbHmdb	59
biodbKegg	65
biodbLipidmaps	42
biodbMirbase	34
biodbNcbi	49
biodbNci	44
biodbUniprot	49
bioDist	260
biomaRt	23885
BioMedR	2
biomformat	5424
BioMM	21
BioMVCClass	59
biomvRCNS	56
BioNAR	60
BioNERO	256
BioNet	278
BioNetStat	67
BioQC	115
BioSeqClass	16
biosigner	82
Biostrings	45169
biosvd	12
BioTIP	70
biotmle	60
biovizBase	5506
BiRewire	116
birta	17
birte	6
biscuiteer	66
BiSeq	145
BitSeq	22
blacksheepr	58
blima	55
BLMA	69
BloodGen3Module	118
bluster	4960
bnbc	115
bnem	59
BOBaFIT	56
borealis	50
BPRMeth	91
BRAIN	109
brainflowprobes	48
brainImageR	1
BrainSABER	7
BrainStars	14
branchpointer	72
breakpointR	61
brendaDb	50
BREW3R.r	7
BRGenomics	148
bridge	16
BridgeDbR	78
BrowserViz	173
BrowserVizDemo	2
BSgenome	13517
BSgenomeForge	100
bsseq	1417
BubbleTree	69
BufferedMatrix	93
BufferedMatrixMethods	58
bugsigdbr	165
BUMHMM	52
bumphunter	2693
BumpyMatrix	551
BUS	58
BUScorrect	50
BUSpaRse	192
BUSseq	48
CaDrA	31
CAEN	43
CAFE	70
CAGEfightR	156
cageminer	57
CAGEr	118
CALIB	14
calm	44
CAMERA	484
CAMTHC	3
CaMutQC	8
canceR	86
cancerclass	77
CancerInSilico	17
CancerMutationAnalysis	14
CancerSubtypes	107
CAnD	9
caOmicsV	7
cardelino	61
Cardinal	169
CardinalIO	116
CARNIVAL	141
casper	62
CATALYST	475
Category	1906
categoryCompare	69
CausalR	63
cbaf	59
CBEA	106
cBioPortalData	437
CBNplot	135
cbpManager	52
ccfindR	91
ccImpute	49
ccmap	75
CCPlotR	39
CCPROMISE	61
ccrepe	88
CDI	30
celaref	70
celda	661
CellaRepertorium	54
CellBarcode	63
cellbaseR	71
CellBench	130
cellGrowth	12
cellHTS	10
cellHTS2	203
CelliD	250
cellity	61
CellMapper	62
cellmigRation	46
CellMixS	79
CellNOptR	194
cellscape	41
CellScore	50
CellTrails	54
cellTree	13
cellxgenedp	104
CEMiTool	140
censcyt	58
Cepo	161
ceRNAnetsim	47
CeTF	81
CexoR	62
CFAssay	50
cfdnakit	43
cfDNAPro	56
cfTools	45
CGEN	64
CGHbase	438
CGHcall	401
cghMCR	67
CGHnormaliter	67
CGHregions	80
ChAMP	544
CHARGE	5
charm	15
ChemmineOB	336
ChemmineR	897
CHETAH	96
ChIC	18
Chicago	92
chihaya	58
chimera	18
chimeraviz	104
ChIPanalyser	53
ChIPComp	62
chipenrich	158
ChIPexoQual	66
ChIPpeakAnno	987
ChIPQC	329
ChIPseeker	1791
chipseq	607
ChIPseqR	85
ChIPSeqSpike	8
ChIPsim	86
ChIPXpress	99
chopsticks	92
chroGPS	13
chromDraw	54
ChromHeatMap	124
ChromoViz	1
chromPlot	135
ChromSCape	66
chromstaR	86
chromswitch	26
chromVAR	1098
CHRONOS	56
cicero	211
CIMICE	51
CINdex	69
circRNAprofiler	71
CircSeqAlignTk	52
cisPath	56
CiteFuse	91
ClassifyR	284
cleanUpdTSeq	105
cleaver	196
clevRvis	49
clippda	61
clipper	101
cliProfiler	48
cliqueMS	107
Clomial	53
Clonality	29
clonotypeR	18
clst	92
clstutils	60
CluMSID	65
ClustAll	7
clustComp	61
clusterExperiment	351
ClusterFoldSimilarity	10
ClusterJudge	53
clusterProfiler	17329
clusterSeq	41
ClusterSignificance	55
clusterStab	78
clustifyr	134
ClustIRR	31
CMA	115
cmapR	400
CNAnorm	63
CNEr	3231
cn.farms	63
cn.mops	262
CNORdt	64
CNORfeeder	70
CNORfuzzy	67
CNORode	92
CNPBayes	6
CNTools	131
CNVfilteR	58
CNVgears	28
cnvGSA	64
CNViz	52
CNVMetrics	49
CNVPanelizer	59
CNVRanger	125
CNVrd2	62
CNVtools	12
cobindR	12
CoCiteStats	54
COCOA	68
codelink	74
CODEX	102
coexnet	13
CoGAPS	250
cogena	85
cogeqc	67
Cogito	47
coGPS	55
COHCAP	59
cola	126
comapr	58
combi	57
coMET	86
coMethDMR	54
compartmap	34
COMPASS	77
compcodeR	86
compEpiTools	70
CompGO	12
ComplexHeatmap	13905
CompoundDb	331
ComPrAn	42
compSPOT	26
conclus	5
concordexR	68
condcomp	2
condiments	90
CONFESS	59
consensus	49
ConsensusClusterPlus	2947
consensusDE	67
consensusOV	110
consensusSeekeR	102
consICA	104
CONSTANd	49
contiBAIT	51
conumee	154
convert	148
copa	57
COPDSexualDimorphism	2
copynumber	143
CopyNumber450k	7
CopyNumberPlots	151
CopywriteR	25
coRdon	170
CoRegFlux	2
CoRegNet	43
CoreGx	364
Cormotif	57
CorMut	13
coRNAi	11
corral	74
CORREP	52
coseq	112
CoSIA	37
cosmiq	57
cosmo	2
cosmoGUI	2
cosmosR	65
COSNet	50
COTAN	70
CountClust	11
countsimQC	139
covEB	49
CoverageView	66
covRNA	54
cpvSNP	57
cqn	285
CRImage	80
CRISPRball	10
crisprBase	159
crisprBowtie	152
crisprBwa	59
crisprDesign	133
crisprScore	162
CRISPRseek	159
crisprseekplus	28
crisprShiny	10
CrispRVariants	131
crisprVerse	68
crisprViz	113
crlmm	237
CrossICC	2
crossmeta	165
CSAR	78
csaw	604
csdR	45
CSSP	28
CSSQ	47
ctc	283
CTdata	42
CTDquerier	53
CTexploreR	11
ctgGEM	4
cTRAP	60
ctsGE	57
CTSV	50
cummeRbund	229
CuratedAtlasQueryR	49
customCMPdb	52
customProDB	83
CVE	5
cyanoFilter	51
cycle	60
cydar	85
cypress	7
CytoDx	67
cytofast	5
cytofkit	24
CyTOFpower	51
cytofQC	53
CytoGLMM	97
cytoKernel	45
cytolib	2789
cytomapper	314
CytoMDS	8
cytoMEM	91
CytoML	463
CytoPipeline	90
CytoPipelineGUI	27
CytoTree	15
cytoviewer	96
dada2	2205
dagLogo	82
daMA	57
DAMEfinder	56
DaMiRseq	120
DAPAR	130
dar	9
DART	62
DASC	1
DASiR	7
dasper	18
DAVIDQuery	6
DBChIP	17
dcanr	121
DCATS	37
dce	65
dcGSA	51
DChIPRep	8
ddCt	90
ddgraph	10
ddPCRclust	71
dearseq	164
debCAM	61
debrowser	177
DECIPHER	2784
deco	9
DEComplexDisease	9
decompTumor2Sig	128
DeconRNASeq	221
decontam	1639
decontX	94
deconvR	65
decoupleR	972
DEDS	13
DeepBlueR	44
DeepPINCS	80
deepSNV	161
DEFormats	259
DegCre	8
DegNorm	56
DEGraph	67
DEGreport	577
DEGseq	161
DelayedArray	42870
DelayedDataFrame	64
DelayedMatrixStats	16174
DelayedRandomArray	89
DelayedTensor	49
DELocal	43
deltaCaptureC	47
deltaGseg	55
DeMAND	50
DeMixT	96
demuxmix	218
demuxSNP	38
densvis	3103
DEP	484
DepecheR	136
DepInfeR	44
DeProViR	8
DEqMS	221
derfinder	574
derfinderHelper	572
derfinderPlot	144
DEScan2	65
DESeq	219
DESeq2	21452
DEsingle	245
DESpace	55
destiny	681
DEsubs	56
DEWSeq	55
DExMA	61
DEXSeq	1486
dexus	17
DFP	54
DIAlignR	55
DiffBind	1042
diffcoexp	175
diffcyt	350
DifferentialRegulation	52
diffGeneAnalysis	55
diffHic	106
DiffLogo	63
diffloop	28
diffuStats	67
diffUTR	49
diggit	52
Dino	55
dinoR	8
Director	44
dir.expiry	4125
DirichletMultinomial	4535
discordant	82
DiscoRhythm	62
distinct	215
dittoSeq	1397
divergence	43
dks	50
DMCFB	42
DMCHMM	52
DMRcaller	80
DMRcate	830
DMRforPairs	26
DMRScan	48
dmrseq	198
DNABarcodeCompatibility	44
DNABarcodes	167
DNAcopy	5209
DNAfusion	48
DNaseR	4
DNAshapeR	75
domainsignatures	11
DominoEffect	56
doppelgangR	121
DOQTL	9
Doscheda	59
DOSE	16944
doseR	46
doubletrouble	64
dpeak	23
drawProteins	184
dreamlet	43
DRIMSeq	306
DriverNet	57
DropletUtils	2600
drugTargetInteractions	57
DrugVsDisease	134
dSimer	6
DSS	926
dStruct	46
DTA	85
dualKS	15
Dune	45
DupChecker	5
dupRadar	105
dyebias	59
DynDoc	1269
easier	133
EasyCellType	53
easylift	32
EasyqpcR	15
easyreporting	51
easyRNASeq	179
EBarrays	226
EBcoexpress	77
EBImage	2652
EBSEA	49
EBSeq	410
EBSeqHMM	50
ecolitk	58
EDASeq	1765
edd	2
EDDA	16
edge	98
edgeR	22883
EDIRquery	39
eds	342
eegc	79
EGAD	62
EGSEA	136
eiR	65
eisa	14
eisaR	105
ELBOW	14
ELMER	176
EMDomics	68
EmpiricalBrownsMethod	129
ENCODExplorer	8
EnhancedVolcano	4221
enhancerHomologSearch	55
EnMCB	50
ENmix	205
EnrichedHeatmap	557
EnrichmentBrowser	550
enrichplot	16937
enrichTF	69
enrichViewNet	39
ensembldb	9896
ensemblVEP	163
ENVISIONQuery	13
epialleleR	57
EpiCompare	50
epidecodeR	45
EpiDISH	582
epigenomix	60
epigraHMM	54
epihet	8
EpiMix	47
epimutacions	57
epiNEM	145
epiregulon	7
epiregulon.extra	8
epistack	50
epistasisGA	42
EpiTxDb	84
epivizr	119
epivizrChart	56
epivizrData	129
epivizrServer	146
epivizrStandalone	59
erccdashboard	65
erma	94
ERSSA	48
esATAC	91
escape	338
escheR	109
esetVis	73
eudysbiome	46
evaluomeR	50
EventPointer	63
EWCE	139
ExCluster	44
ExiMiR	59
exomeCopy	299
exomePeak	19
exomePeak2	100
exonmap	2
ExperimentHub	7424
ExperimentHubData	294
ExperimentSubset	54
explorase	13
ExploreModelMatrix	152
ExpressionAtlas	160
ExpressionView	15
exprExternal	0
externalVector	2
extraChIPs	67
fabia	175
facopy	4
factDesign	55
factR	52
faers	10
FamAgg	73
famat	58
farms	46
fastLiquidAssociation	54
FastqCleaner	80
fastreeR	71
fastseg	754
fbat	2
FCBF	43
fCCAC	54
fCI	51
fcoex	75
fcScan	53
fdrame	51
FEAST	112
FeatSeekR	40
fedup	49
FELLA	126
FEM	21
fenr	32
ffpe	70
fgga	47
FGNet	113
fgsea	16403
FilterFFPE	46
findIPs	6
FindIT2	54
FindMyFriends	10
FISHalyseR	51
fishpond	280
FitHiC	61
flagme	58
FLAMES	76
flipflop	13
flowAI	558
flowBeads	61
flowBin	68
flowcatchR	59
flowCHIC	60
flowCL	18
flowClean	203
flowClust	831
flowCore	2864
flowCut	101
flowCyBar	54
flowDensity	263
flowFit	15
flowFlowJo	6
flowFP	158
flowGate	70
flowGraph	50
flowMap	46
flowMatch	68
flowMeans	158
flowMerge	137
flowPeaks	179
flowPhyto	4
flowPloidy	63
flowPlots	57
flowQ	9
flowQB	16
FlowRepositoryR	9
FlowSOM	1073
flowSpecs	68
flowSpy	4
flowStats	523
flowTime	63
flowTrans	83
flowType	15
flowUtils	40
flowViz	1054
flowVS	100
flowWorkspace	1300
fmcsR	267
fmrs	116
fobitools	47
focalCall	5
FoldGO	30
FourCSeq	10
FRASER	110
frenchFISH	41
FRGEpistasis	56
frma	155
frmaTools	73
FScanR	22
FunChIP	53
FunciSNP	13
funtooNorm	60
FuseSOM	51
GA4GHclient	108
GA4GHshiny	63
gaga	102
gage	798
gaggle	46
gaia	26
GAPGOM	7
GAprediction	50
garfield	53
GARS	57
GateFinder	58
gatom	32
gaucho	11
GBScleanR	42
gcapc	55
gcatest	55
gCMAP	15
gCMAPWeb	13
gCrisprTools	58
gcrma	1368
GCSConnection	4
GCSFilesystem	5
GCSscore	23
GDCRNATools	295
gDNAx	46
gDR	34
gDRcore	78
gDRimport	79
gDRstyle	64
gDRutils	99
GDSArray	131
gdsfmt	2088
GeDi	9
geecc	7
GEM	56
gemini	51
gemma.R	56
genArise	56
genbankr	119
gene2pathway	3
GeneAccord	8
GeneAnswers	24
geneAttribution	51
GeneBreak	63
geneClassifiers	50
GENE.E	11
GeneExpressionSignature	68
genefilter	12906
genefu	417
GeneGA	45
GeneGeneInteR	54
GeneGroupAnalysis	2
GeneMeta	99
GeneNetworkBuilder	75
GeneOverlap	432
geneplast	92
geneplotter	7152
GeneR	3
geneRecommender	55
GeneRegionScan	62
GeneRfold	1
geneRxCluster	55
GeneSelectMMD	105
GeneSelector	13
GENESIS	338
GeneSpring	2
GeneStructureTools	76
geNetClassifier	148
GeneticsBase	2
GeneticsDesign	13
GeneticsPed	101
GeneTonic	256
GeneTraffic	2
GeneTS	1
geneXtendeR	109
GENIE3	1172
genoCN	54
GenoGAM	9
genomation	632
GenomAutomorphism	40
GenomeBase	0
GenomeGraphs	18
GenomeInfoDb	56993
genomeIntervals	177
genomes	66
GenomicAlignments	23755
GenomicDataCommons	1162
GenomicDistributions	89
GenomicFeatures	20016
GenomicFiles	1285
genomicInstability	48
GenomicInteractionNodes	47
GenomicInteractions	349
GenomicOZone	57
GenomicPlot	48
GenomicRanges	41912
GenomicScores	639
GenomicSuperSignature	55
GenomicTuples	50
Genominator	15
genoset	22
genotypeeval	14
GenoView	1
genphen	8
GenProSeq	39
GenRank	6
GenVisR	290
GeoDiff	75
GEOexplorer	60
GEOfastq	67
GEOmetadb	234
GeomxTools	399
GEOquery	8975
GEOsearch	3
GEOsubmission	56
GeoTcgaData	61
gep2pep	52
gespeR	86
getDEE2	47
geva	42
GEWIST	49
gff3Plotter	1
gg4way	31
GGBase	16
ggbio	2135
ggcyto	911
ggkegg	195
ggmanh	113
ggmsa	509
GGPA	45
ggsc	40
ggspavis	144
GGtools	19
ggtree	20073
ggtreeDendro	59
ggtreeExtra	1011
ggtreeSpace	8
GIGSEA	45
ginmappeR	7
gINTomics	5
girafe	90
GISPA	45
GLAD	228
GladiaTOX	46
Glimma	1208
glmGamPoi	3892
glmSparseNet	137
GlobalAncova	1085
globalSeq	52
globaltest	1798
GloScope	28
gmapR	168
GmicR	66
gmoviz	52
GMRP	51
GNET2	51
GNOSIS	37
goCluster	0
GOexpress	89
GOfuncR	282
GOFunction	14
GoogleGenomics	5
GOpro	114
goProfiles	124
GOSemSim	16609
goseq	1152
GOSim	116
goSorensen	52
goSTAG	59
GOstats	1725
GOsummaries	56
GOTHiC	89
goTools	64
GPA	50
gpart	15
gpls	167
gprege	13
gpuMagic	50
gQTLBase	11
gQTLstats	9
GrafGen	7
gramm4R	3
GRaNIE	138
granulator	116
graper	49
graph	18451
GraphAlignment	58
GraphAT	56
graphite	2950
GraphPAC	102
GRENITS	57
GreyListChIP	968
GRmetrics	84
groHMM	72
GRridge	15
GSALightning	53
GSAR	86
GSCA	59
gscreend	46
GSEABase	8633
GSEABenchmarkeR	81
GSEAlm	79
GSEAmining	62
gsean	59
GSgalgoR	47
GSReg	60
GSRI	60
GSVA	5976
gtrellis	128
GUIDEseq	77
Guitar	131
Gviz	3899
GWAS.BAYES	49
gwascat	595
GWASTools	595
gwasurvivr	82
GWENA	177
gypsum	274
h5vc	82
hapFabia	56
Harman	166
HarmonizR	40
Harshlight	70
hca	65
HCABrowser	4
HCAExplorer	2
HCAMatrixBrowser	2
HCsnip	10
HDF5Array	12651
HDTD	47
heatmaps	237
Heatplus	406
HelloRanges	133
HELP	57
HEM	53
hermes	90
HERON	29
Herper	156
hexbin	24
HGC	60
hiAnnotator	107
HIBAG	128
HicAggR	7
HiCBricks	149
HiCcompare	287
HiCDCPlus	76
HiCDOC	105
HiCExperiment	138
HiContacts	104
HiCool	64
hicrep	10
hicVennDiagram	33
hierGWAS	55
hierinf	43
HilbertCurve	88
HilbertVis	181
HilbertVisGUI	38
HiLDA	69
hipathia	123
HIPPO	47
hiReadsProcessor	57
HIREewas	49
HiTC	135
hmdbQuery	70
HMMcopy	259
hoodscanR	45
hopach	310
HPAanalyze	123
hpar	273
HPAStainR	15
HPiP	49
HTqPCR	161
HTSanalyzeR	16
HTSeqGenie	54
htSeqTools	15
HTSFilter	221
HubPub	115
HumanTranscriptomeCompendium	48
hummingbird	42
HybridExpress	8
HybridMTest	130
hypeR	78
hyperdraw	113
hypergraph	161
iASeq	51
iasva	48
iBBiG	123
ibh	53
iBMQ	47
iCARE	111
Icens	457
icetea	53
iCheck	53
iChip	53
iClusterPlus	334
iCNV	52
iCOBRA	164
ideal	105
IdeoViz	66
idiogram	58
IdMappingAnalysis	11
IdMappingRetrieval	13
idpr	66
idr2d	51
IFAA	46
iFlow	2
iGC	51
IgGeneUsage	48
igvR	109
igvShiny	9
IHW	717
illuminaio	2895
ILoReg	43
imageHTS	22
IMAS	58
imcRtools	186
Imetagene	7
IMMAN	49
ImmuneSpaceR	62
immunoClust	65
immunotation	49
IMPCdata	47
ImpulseDE	5
ImpulseDE2	11
impute	10399
INDEED	45
iNETgrate	41
infercnv	1056
infinityFlow	66
Informeasure	38
InPAS	58
INPower	55
inSilicoDb	12
inSilicoMerging	13
INSPEcT	68
INTACT	46
InTAD	52
intansv	79
interacCircos	60
InteractionSet	1847
InteractiveComplexHeatmap	378
interactiveDisplay	103
interactiveDisplayBase	9991
InterCellar	76
IntEREst	67
InterMineR	63
IntOMICS	35
IntramiRExploreR	48
inveRsion	15
IONiseR	70
iontree	11
iPAC	129
iPath	42
ipdDb	103
IPO	119
IPPD	13
IRanges	50802
IRISFGM	77
IrisSpatialFeatures	3
ISAnalytics	54
iSEE	462
iSEEde	45
iSEEfier	9
iSEEhex	146
iSEEhub	107
iSEEindex	41
iSEEpathways	37
iSEEu	112
iSeq	50
ISLET	43
iSNetwork	1
isobar	82
IsoBayes	28
IsoCorrectoR	97
IsoCorrectoRGUI	59
IsoformSwitchAnalyzeR	256
IsoGeneGUI	15
ISoLDE	43
isomiRs	123
iSPlot	1
ITALICS	59
iterativeBMA	58
iterativeBMAsurv	53
iterClust	46
iteremoval	7
IVAS	78
ivygapSE	50
IWTomics	51
jmosaics	6
joda	13
JunctionSeq	12
karyoploteR	873
katdetectr	54
KBoost	44
KCsmart	63
kebabs	147
KEGGgraph	5579
KEGGlincs	68
keggorth	1
keggorthology	141
KEGGprofile	21
KEGGREST	35411
KEGGSOAP	5
kimod	5
KinSwingR	53
kissDE	58
KnowSeq	57
knowYourCG	6
LACE	109
lapmix	51
LBE	241
ldblock	78
LEA	513
LedPred	46
lefser	573
lemur	50
les	93
levi	45
lfa	292
limma	31459
limmaGUI	71
limpca	9
LINC	7
LineagePulse	40
lineagespot	46
LinkHD	48
Linnorm	221
LinTInd	51
lionessR	51
lipidr	188
LiquidAssociation	80
lisaClust	134
lmdme	54
LMGene	13
LOBSTAHS	53
loci2path	48
logicFS	87
logitT	32
Logolas	7
lol	10
LOLA	303
LoomExperiment	587
LowMACA	16
LPE	88
LPEadj	44
lpNet	65
lpsymphony	1135
LRBaseDbi	114
LRcell	49
lumi	1119
lute	10
LVSmiRNA	14
LymphoSeq	63
M3C	689
M3D	7
M3Drop	592
m6Aboost	41
maanova	20
Maaslin2	1006
Macarron	54
macat	46
maCorrPlot	55
MACPET	9
MACSQuantifyR	43
MACSr	103
maDB	3
made4	238
MADSEQ	54
maftools	2548
MAGAR	168
MAGeCKFlute	367
magpie	48
magrene	45
MAI	55
maigesPack	43
MAIT	59
makecdfenv	173
makePlatformDesign	2
MANOR	56
manta	14
MantelCorr	49
MAPFX	6
mAPKL	11
maPredictDSC	60
mapscape	50
mariner	55
marr	45
marray	1874
martini	55
maser	122
maSigPro	254
maskBAD	60
MassArray	53
massiR	58
MassSpecWavelet	1926
MAST	2022
mastR	105
matchBox	54
matchprobes	2
MatrixGenerics	39803
MatrixQCvis	116
MatrixRider	60
matter	205
MaxContrastProjection	8
MBAmethyl	40
MBASED	54
MBCB	53
MBECS	62
mbkmeans	446
mbOmic	14
mBPCR	59
MBQN	52
mbQTL	47
MBttest	50
mcaGUI	13
MCbiclust	53
MCRestimate	13
mCSEA	104
mdgsa	9
mdp	55
mdqc	101
MDTS	46
MEAL	79
MeasurementError.cor	50
MEAT	44
MEB	48
MEDIPS	110
MEDME	53
megadepth	119
MEIGOR	56
Melissa	50
memes	183
MergeMaid	15
Mergeomics	63
MeSHDbi	264
meshes	148
meshr	142
MeSHSim	2
MesKit	69
messina	55
metaArray	14
Metab	26
metabCombiner	55
metabinR	41
MetaboAnnotation	282
MetaboCoreUtils	1329
metabolomicsWorkbenchR	77
metabomxtr	54
MetaboSignal	116
metaCCA	189
MetaCyto	73
metagene	32
metagene2	67
metagenomeFeatures	8
metagenomeSeq	1656
metahdep	57
metaMS	102
MetaNeighbor	90
MetaPhOR	54
metapod	4696
metapone	64
metaSeq	68
metaseqR	18
metaseqR2	53
metavizr	12
MetaVolcanoR	55
metaX	2
MetCirc	68
MethCP	7
methimpute	58
methInheritSim	61
methodical	8
MethPed	52
MethReg	68
methrix	81
MethTargetedNGS	50
methVisual	13
methyAnalysis	19
MethylAid	90
methylCC	71
methylclock	147
methylGSA	106
methyLImp2	8
methylInheritance	64
methylKit	637
MethylMix	95
methylMnM	74
methylPipe	119
methylscaper	51
MethylSeekR	138
methylSig	72
methylumi	1439
methyvim	7
MetID	53
MetNet	51
mfa	81
Mfuzz	1159
MGFM	60
MGFR	63
MGnifyR	9
mgsa	108
mia	1451
miaSim	96
miaViz	242
MiChip	54
microbiome	1637
microbiomeDASim	56
microbiomeExplorer	73
microbiomeMarker	373
MicrobiomeProfiler	103
MicrobiotaProcess	498
microRNA	157
microSTASIS	45
MICSQTL	34
midasHLA	52
MIGSA	13
miloR	266
mimager	63
MIMOSA	31
mina	44
MineICA	74
minet	768
minfi	2318
MinimumDistance	65
MiPP	54
miQC	107
MIRA	122
MiRaGE	59
miRBaseConverter	116
miRcomp	52
mirIntegrator	65
MIRit	9
miRLAB	64
miRmine	34
miRNAmeConverter	56
miRNApath	65
miRNAtap	143
miRSM	40
miRsponge	5
miRspongeR	40
Mirsynergy	11
mirTarRnaSeq	61
missMethyl	958
missRows	49
mistyR	86
mitch	64
mitoClone2	55
mitoODE	11
mixOmics	2817
MLInterfaces	382
mlm4omics	2
MLP	123
MLSeq	156
MMAPPR2	17
MMDiff	8
MMDiff2	49
mmgmos	1
mmnet	8
MmPalateMiRNA	14
MMUPHin	113
mnem	151
moanin	119
mobileRNA	9
MobilityTransformR	34
MODA	55
ModCon	42
Modstrings	209
MOFA	5
MOFA2	441
MOGAMUN	50
mogsa	171
MoleculeExperiment	71
MOMA	55
monaLisa	130
monocle	3060
Moonlight2R	41
MoonlightR	71
MoPS	6
mosaics	136
mosbi	48
MOSim	49
Motif2Site	45
motifbreakR	212
motifcounter	57
MotifDb	640
motifmatchr	1330
motifRG	15
motifStack	712
motifTestR	8
MotIV	29
MouseFM	100
MPFE	44
mpra	56
MPRAnalyze	60
MQmetrics	41
mQTL.NMR	5
msa	1530
MSA2dist	127
MsBackendMassbank	74
MsBackendMgf	457
MsBackendMsp	232
MsBackendRawFileReader	60
MsBackendSql	64
MsCoreUtils	3604
MsDataHub	60
MSEADbi	3
MsExperiment	982
MsFeatures	1699
msgbsR	65
MSGFgui	9
MSGFplus	12
msImpute	112
mslp	39
msmsEDA	285
msmsTests	268
MSnbase	3289
MSnID	241
MSPrep	105
msPurity	76
msqrob2	113
MsQuality	63
MSstats	504
MSstatsBig	29
MSstatsConvert	480
MSstatsLiP	74
MSstatsLOBD	47
MSstatsPTM	196
MSstatsQC	75
MSstatsQCgui	44
MSstatsSampleSize	21
MSstatsShiny	98
MSstatsTMT	275
MSstatsTMTPTM	3
MTseeker	2
MuData	56
Mulcom	74
MultiAssayExperiment	5125
MultiBaC	66
multiClust	85
multicrispr	57
MultiDataSet	1210
multiGSEA	107
multiHiCcompare	180
MultiMed	53
multiMiR	221
MultimodalExperiment	37
multiOmicsViz	41
MultiRNAflow	34
multiscan	53
multiSight	69
multistateQTL	7
multiWGCNA	49
multtest	12325
mumosa	70
MungeSumstats	998
muscat	418
muscle	318
musicatk	77
MutationalPatterns	331
MVCClass	91
mvGST	3
MWASTools	149
mygene	342
myvariant	84
mzID	3144
mzR	3444
NADfinder	57
NanoMethViz	79
NanoStringDiff	92
NanoStringNCTools	387
NanoStringQCPro	43
nanotatoR	100
NanoTube	81
NarrowPeaks	14
NBAMSeq	84
NBSplice	9
ncdfFlow	1148
ncGTW	42
NCIgraph	116
ncRNAtools	47
ndexr	69
neaGUI	6
nearBynding	49
Nebulosa	1000
NeighborNet	23
nem	17
nempi	57
NetActivity	42
netbenchmark	7
netbiov	31
netboost	42
netboxr	8
netDx	47
nethet	52
netOmics	39
NetPathMiner	60
netprioR	48
netReg	7
netresponse	69
NetSAM	61
netSmooth	61
networkBMA	15
netZooR	60
NeuCA	35
NewWave	115
NGScopy	6
ngsReports	74
nipalsMCIA	31
nnNorm	58
nnSVG	97
NOISeq	555
nondetects	66
NoRCE	51
normalize450K	47
NormalyzerDE	159
NormqPCR	173
normr	133
NPARC	54
npGSEA	58
NTW	52
nucleoSim	56
nucleR	80
nuCpos	49
nudge	10
nullranges	162
NuPoP	71
NxtIRFcore	16
occugene	49
OCplus	80
octad	54
ODER	13
odseq	65
OGRE	54
OGSA	7
oligo	1593
oligoClasses	1671
OLIN	91
OLINgui	56
omada	39
OmaDB	190
omicade4	136
OmicCircos	187
omicplotR	58
omicRexposome	56
OmicsLonDA	21
OmicsMarkeR	7
OMICsPCA	60
omicsPrint	52
omicsViewer	52
Omixer	52
OmnipathR	518
ompBAM	100
Onassis	9
oncomix	49
oncoscanR	44
OncoScore	55
OncoSimulR	60
oneChannelGUI	12
oneSENSE	19
onlineFDR	46
ontoCAT	11
ontoProc	222
ontoTools	2
openCyto	673
openPrimeR	126
openPrimeRui	62
OpenStats	47
OperaMate	3
oposSOM	76
oppar	60
oppti	44
optimalFlow	57
OPWeight	51
OrderedList	79
ORFhunteR	51
ORFik	203
OrganismDbi	3217
Organism.dplyr	425
orthogene	324
orthos	31
OSAT	65
Oscope	89
OTUbase	62
OutlierD	13
OUTRIDER	207
OutSplice	47
OVESEG	47
PAA	68
packFinder	52
padma	44
PADOG	236
pageRank	53
PAIRADISE	79
paircompviz	60
pairedGSEA	43
pairkat	41
pairseqsim	1
pamr	5
pandaR	126
panelcn.mops	80
PAnnBuilder	13
PanomiR	64
panp	57
PANR	57
PanViz	39
PanVizGenerator	9
PAPi	17
pareg	49
parglms	50
parody	100
partCNV	30
PAST	46
Path2PPI	59
pathifier	123
pathlinkR	12
PathNet	67
PathoStat	66
pathprint	7
pathRender	59
pathVar	24
pathview	4314
pathwayPCA	74
PathwaySplice	6
PatientGeneSets	1
paxtoolsr	79
Pbase	9
pbcmc	4
pcaExplorer	471
pcaGoPromoter	13
pcaMethods	5218
PCAN	58
PCAtools	1174
pcot2	14
PCpheno	14
pcxn	49
PDATK	83
pdInfoBuilder	114
pdmclass	11
PeacoQC	217
peakPantheR	58
PECA	62
peco	47
Pedixplorer	8
pengls	41
PepsNMR	118
pepStat	51
pepXMLTab	59
PERFect	40
periodicDNA	47
perturbatr	6
pfamAnalyzeR	241
PFP	15
PGA	10
pgca	47
PGSEA	49
pgUtils	3
pgxRpi	12
phantasus	144
phantasusLite	35
PharmacoGx	272
phemd	36
phenoDist	11
PhenoGeneRanker	41
phenomis	54
phenopath	87
phenoTest	136
PhenStat	60
philr	182
PhIPData	97
phosphonormalizer	48
PhosR	101
PhyloProfile	74
phyloseq	5391
Pi	71
piano	467
pickgene	50
PICS	113
Pigengene	118
PING	68
pint	10
pipeComp	51
pipeFrame	166
PIPETS	8
PIUMA	8
pkgDepTools	21
planet	181
planttfhunter	42
plasmut	26
plateCore	13
plethy	21
plgem	112
plier	115
PloGO2	65
plotgardener	336
plotGrouper	48
PLPE	56
plrs	12
PLSDAbatch	11
plw	14
plyinteractions	37
plyranges	1238
pmm	44
pmp	118
PoDCall	46
podkat	54
pogos	59
polyester	122
Polyfit	8
POMA	75
POST	7
PoTRA	7
PowerExplorer	6
powerTCR	380
POWSC	58
ppcseq	48
PPInfer	117
ppiStats	15
pqsfinder	75
prada	20
pram	47
prebs	70
preciseTAD	57
PrecisionTrialDrawer	6
PREDA	85
predictionet	13
preprocessCore	14082
primirTSS	57
PrInCE	56
Prize	7
proActiv	61
proBAMr	53
proBatch	31
PROcess	91
procoil	61
ProCoNA	11
proDA	230
proFIA	12
profileplyr	227
profileScoreDist	48
progeny	408
projectR	108
pRoloc	256
pRolocGUI	85
PROMISE	101
PROPER	84
PROPS	52
Prostar	76
prot2D	12
proteasy	28
proteinProfiles	52
ProteoDisco	51
ProteomicsAnnotationHubData	9
ProteoMM	76
proteoQC	8
protGear	53
ProtGenerics	11687
PSEA	45
psichomics	71
PSICQUIC	22
PSMatch	422
psygenet2r	69
ptairMS	48
PubScore	4
pulsedSilac	5
puma	98
PureCN	160
pvac	53
pvca	244
Pviz	75
pwalign	505
PWMEnrich	162
pwOmics	105
pwrEWAS	29
qckitfastq	57
qcmetrics	93
QDNAseq	383
QFeatures	1495
qmtools	49
qpcrNorm	61
qpgraph	181
qPLEXanalyzer	70
qrqc	23
qsea	64
qsmooth	129
QSutils	63
qsvaR	112
QTLExperiment	30
Qtlizer	50
QUALIFIER	15
quantiseqr	441
quantro	336
quantsmooth	617
QuartPAC	61
QuasR	353
QuaternaryProd	73
QUBIC	135
qusage	393
qvalue	16817
R3CPET	54
r3Cseq	88
R453Plus1Toolbox	65
R4RNA	624
RadioGx	63
raer	30
RaggedExperiment	917
RAIDS	32
rain	90
rama	16
RamiGO	10
ramr	45
ramwas	124
RandomWalkRestartMH	110
randPack	56
randRotation	42
RankProd	290
RAREsim	42
RareVariantVis	61
Rariant	14
Rarr	114
rawrr	202
RbcBook1	77
Rbec	53
RBGL	9411
RBioFormats	111
RBioinf	64
rBiopaxParser	168
rBLAST	13
RBM	56
Rbowtie	508
Rbowtie2	307
rbsurv	63
Rbwa	100
Rcade	19
RCAS	128
RCASPAR	51
rcellminer	64
rCGH	109
Rchemcpp	13
RchyOptimyx	14
RcisTarget	834
RCM	62
Rcollectl	30
Rcpi	121
RCSL	35
Rcwl	104
RcwlPipelines	95
RCX	93
RCy3	942
RCyjs	72
RCytoscape	11
RDAVIDWebService	32
Rdbi	2
RdbiPgSQL	2
rDGIdb	76
Rdisop	463
RDRToolbox	123
ReactomeContentService4R	102
ReactomeGraph4R	44
ReactomeGSA	220
ReactomePA	2346
readat	7
ReadqPCR	202
reb	12
REBET	43
rebook	170
receptLoss	41
reconsi	50
recount	404
recount3	302
recountmethylation	62
recoup	54
RedeR	333
RedisParam	43
REDseq	84
RefNet	12
RefPlus	40
RegEnrich	100
regionalpcs	34
RegionalST	40
regioneR	2038
regioneReloaded	47
regionReport	125
regsplice	49
regutools	60
REMP	68
Repitools	318
ReportingTools	714
reposTools	0
RepViz	106
ReQON	47
ResidualMatrix	3432
RESOLVE	52
Resourcerer	5
restfulSE	109
retrofit	43
ReUseData	44
rexposome	102
rfaRm	42
Rfastp	136
rflowcyt	2
rfPred	56
rGADEM	278
RGalaxy	16
rGenomeTracks	40
Rgin	7
RGMQL	49
RgnTX	44
rgoslin	62
RGraph2js	53
Rgraphviz	9911
rGREAT	649
RGSEA	67
rgsepd	49
rhdf5	19481
rhdf5client	144
rhdf5filters	18798
Rhdf5lib	23346
Rhisat2	218
Rhtslib	24210
rHVDM	12
RiboCrypt	51
RiboDiPA	50
RiboProfiling	81
ribor	46
riboSeqR	47
ribosomeProfilingQC	79
rifi	39
rifiComparative	37
RImmPort	46
Ringo	347
Rintact	1
RIPAT	26
RIPSeeker	24
Risa	58
RITAN	62
RIVER	51
RJMCMCNucleosomes	54
RLassoCox	49
RLMM	53
RLSeq	36
RMAGEML	2
Rmagpie	54
RMAPPER	3
RMassBank	101
rMAT	11
rmelting	66
RmiR	13
Rmmquant	48
rmspc	53
RNAAgeCalc	69
RNAdecay	37
rnaEditr	49
RNAinteract	77
RNAither	16
RNAmodR	113
RNAmodR.AlkAnilineSeq	59
RNAmodR.ML	52
RNAmodR.RiboMethSeq	54
RNAprobR	7
RNAsense	43
rnaseqcomp	59
RNAseqCovarImpute	28
rnaSeqMap	15
RNASeqPower	144
RNASeqR	7
RnaSeqSampleSize	91
RnBeads	286
Rnits	52
roar	59
roastgsa	27
ROC	1022
ROCpAI	43
RolDE	48
Roleswitch	13
Rolexa	8
rols	425
ROntoTools	214
ropls	1194
ROSeq	46
ROTS	206
RPA	104
rprimer	71
RProtoBufLib	2713
RpsiXML	19
rpx	241
Rqc	262
rqt	53
rqubic	82
rRDP	63
Rredland	1
RRHO	97
rrvgo	440
Rsamtools	23110
rsbml	154
rScudo	50
rsemmed	43
RSeqAn	80
rSFFreader	10
RSNPper	1
Rsubread	2231
RSVSim	65
rSWeeP	46
rTANDEM	16
RTCA	58
RTCGA	539
RTCGAToolbox	572
RTN	171
RTNduals	80
RTNsurvival	61
RTools4TB	2
RTopper	57
Rtpca	45
rtracklayer	21288
Rtreemix	57
rTRM	142
rTRMui	63
runibic	78
Ruuid	4
RUVcorr	57
RUVnormalize	65
RUVSeq	931
Rvisdiff	28
RVS	49
RWebServices	3
rWikiPathways	385
S4Arrays	35847
S4Vectors	54444
safe	606
SAGElyzer	1
sagenhaft	54
SAGx	17
SAIGEgds	60
samExploreR	7
sampleClassifier	54
SamSPECTRAL	146
sangeranalyseR	173
sangerseqR	897
SANTA	55
sapFinder	13
saps	2
SARC	31
sarks	43
saseR	9
satuRn	264
savR	28
SBGNview	157
sbgr	1
SBMLR	66
SC3	393
Scale4C	44
ScaledMatrix	11828
scAlign	17
scanMiR	76
scanMiRApp	58
scAnnotatR	127
SCAN.UPC	161
SCANVIS	59
SCArray	77
SCArray.sat	48
SCATE	77
scater	6742
scatterHatch	40
scBFA	54
SCBN	79
scBubbletree	49
scCB2	53
scClassifR	3
scClassify	75
sccomp	94
scDataviz	79
scDblFinder	1384
scDD	138
scDDboost	43
scde	336
scDesign3	40
scds	489
SCFA	45
scFeatureFilter	50
scFeatures	63
scfind	5
scGPS	54
schex	228
scHOT	64
scider	34
scifer	52
ScISI	20
scMAGeCK	7
scmap	259
scMerge	491
scMET	48
scmeth	68
scMitoMut	8
scMultiSim	7
SCnorm	93
scone	110
Sconify	54
SCOPE	54
scoreInvHap	56
scp	128
scPCA	88
scPipe	133
scran	4698
scReClassify	44
scRecover	56
screenCounter	41
ScreenR	42
scRepertoire	385
scRNAseqApp	63
scruff	65
scry	235
scShapes	45
scsR	13
scTensor	122
scTGIF	138
scTHI	44
scTreeViz	48
scuttle	9772
scviR	47
SDAMS	54
sechm	150
segmenter	54
segmentSeq	61
selectKSigs	47
SELEX	53
SemDist	46
semisup	47
SemSim	1
SEPA	5
SEPIRA	27
seq2pathway	110
seqArchR	82
seqArchRplus	50
SeqArray	909
seqbias	77
seqCAT	55
seqCNA	51
seqcombo	53
SeqGate	42
SeqGSEA	131
seq.hotSPOT	38
seqLogo	3558
seqPattern	650
seqplots	11
seqsetvis	65
SeqSQC	86
seqTools	120
SeqVarTools	441
sesame	655
SEtools	129
sevenbridges	64
sevenC	49
SGCP	101
SGSeq	312
SharedObject	150
shinyepico	65
shiny.gosling	12
shinyMethyl	106
shinyTANDEM	12
ShortRead	6250
SIAMCAT	112
SICtools	45
sigaR	13
SigCheck	56
sigFeature	205
SigFuge	58
siggenes	3327
sights	53
signatureSearch	217
signeR	73
signet	6
signifinder	53
sigPathway	27
SigsPack	50
sigsquared	51
SIM	52
SIMAT	54
SimBindProfiles	54
SimBu	61
SIMD	50
SimFFPE	43
similaRpeak	59
SIMLR	249
simona	49
simPIC	7
simpleaffy	98
simpleSeg	68
simplifyEnrichment	739
simulatorAPMS	2
simulatorZ	8
sincell	58
single	42
SingleCellAlleleExperiment	9
SingleCellExperiment	14637
SingleCellSignalR	252
singleCellTK	246
SingleMoleculeFootprinting	51
SingleR	3850
singscore	1245
SiPSiC	45
SISPA	28
sitadela	47
sitePath	55
sizepower	61
SJava	4
sketchR	9
skewr	43
slalom	103
SLGI	15
slingshot	1449
slinky	6
SLqPCR	60
SMAD	47
SMAP	45
smartid	8
SMITE	56
smoothclust	8
SNAGEE	54
snapCGH	105
snapcount	56
snifter	136
snm	165
SNPchip	20
SNPediaR	50
SNPhood	58
snpMatrix	8
SNPRelate	1638
snpStats	2244
soGGi	327
sojourner	11
SomatiCA	9
SomaticSignatures	178
SOMNiBUS	55
SpaceMarkers	8
SpacePAC	96
spade	10
Spaniel	76
sparrow	107
SparseArray	23738
sparseDOSSA	35
sparseMatrixStats	15394
sparsenetgls	47
SparseSignatures	54
spaSim	58
SpatialCPie	71
spatialDE	102
SpatialDecon	175
SpatialExperiment	1774
SpatialFeatureExperiment	151
spatialHeatmap	153
SpatialOmicsOverlay	63
spatzie	47
speckle	151
specL	58
SpeCond	71
Spectra	1562
SpectralTAD	78
SPEM	71
SPIA	647
SPIAT	105
spicyR	183
SpidermiR	79
spikeLI	48
spiky	44
spillR	10
spkTools	53
splatter	423
splicegear	12
spliceR	15
spliceSites	14
SpliceWiz	82
SplicingFactory	42
SplicingGraphs	90
splineTCDiffExpr	0
splineTimeR	66
SPLINTER	56
splots	207
SPONGE	56
spoon	8
SpotClean	88
SPOTlight	221
spotSegmentation	11
SpotSweeper	5
spqn	47
SPsimSeq	134
SQLDataFrame	49
SQUADD	45
sRACIPE	62
SRAdb	376
sRAP	14
SRGnet	6
srnadiff	52
sscore	31
sscu	48
sSeq	174
ssize	91
sSNAPPY	101
SSPA	64
ssPATHS	43
ssrch	78
ssviz	54
stageR	179
stam	1
STAN	14
standR	115
staRank	63
StarBioTrek	53
Starr	13
STATegRa	60
Statial	63
statTarget	95
STdeconvolve	126
stepNorm	54
stepwiseCM	9
stJoincount	52
strandCheckR	52
Streamer	60
STRINGdb	1139
STROMA4	29
struct	149
Structstrings	156
structToolbox	105
StructuralVariantAnnotation	213
SubCellBarCode	52
subSeq	68
SUITOR	40
SummarizedBenchmark	51
SummarizedExperiment	38056
Summix	38
supersigs	41
supraHex	423
surfaltr	44
SurfR	7
survcomp	1045
survtype	52
Sushi	62
sva	7107
svaNUMT	56
SVAPLSseq	6
svaRetro	57
SVM2CRM	6
SVMDO	100
SWATH2stats	58
SwathXtend	62
swfdr	58
SwimR	10
switchBox	121
switchde	56
synapsis	41
synapter	92
synergyfinder	183
SynExtend	52
synlet	48
SynMut	46
syntenet	123
systemPipeR	1181
systemPipeShiny	59
systemPipeTools	50
tadar	36
TADCompare	78
tanggle	62
TAPseq	55
target	46
TargetDecoy	44
TargetScore	65
TargetSearch	70
TarSeqQC	13
TBSignatureProfiler	67
TCC	194
TCGAbiolinks	3536
TCGAbiolinksGUI	25
TCGAutils	832
TCseq	154
TDARACNE	16
TDbasedUFE	74
TDbasedUFEadv	59
TEKRABber	100
TENxIO	50
tenXplore	52
TEQC	67
ternarynet	55
terraTCGAdata	52
TFARM	47
TFBSTools	3222
TFEA.ChIP	67
TFHAZ	52
TFutils	74
tidybulk	196
tidyCoverage	9
tidyomics	9
tidySingleCellExperiment	195
tidySpatialExperiment	12
tidySummarizedExperiment	315
tigre	58
TileDBArray	54
tilingArray	144
timecourse	71
timeOmics	70
timescape	76
TimeSeriesExperiment	9
TimiRGeN	61
TIN	50
TissueEnrich	156
TitanCNA	79
tkWidgets	1269
tLOH	45
TMixClust	62
TNBC.CMS	51
TnT	42
TOAST	382
tofsims	8
tomoda	42
tomoseqr	43
TOP	45
ToPASeq	7
topconfects	167
topdownr	74
topGO	3009
ToxicoGx	66
TPP	93
TPP2D	51
tpSVG	8
tracktables	115
trackViewer	485
tradeSeq	498
TrajectoryGeometry	40
TrajectoryUtils	1857
transcriptogramer	59
transcriptR	68
transformGamPoi	69
transite	54
tRanslatome	117
transmogR	8
transomics2cytoscape	49
TransView	54
TraRe	5
traseR	51
Travel	3
traviz	57
TreeAndLeaf	128
treeclimbR	9
treeio	19666
treekoR	56
TreeSummarizedExperiment	1550
TREG	43
trena	39
TReNA	1
Trendy	58
TRESS	95
tricycle	212
triform	15
trigger	61
trio	98
triplex	55
tripr	47
tRNA	140
tRNAdbImport	113
tRNAscanImport	73
TRONCO	71
TSAR	25
TSCAN	610
tscR	18
tspair	16
TSRchitect	10
TSSi	13
ttgsea	81
TTMap	47
TurboNorm	62
TVTB	59
tweeDEseq	135
twilight	108
twoddpcr	53
txcutr	45
txdbmaker	299
tximeta	1140
tximport	3310
TxRegInfra	6
TypeInfo	49
UCell	1213
UCSC.utils	3263
Ularcirc	62
UMI4Cats	57
uncoverappLib	53
UNDO	71
unifiedWMWqPCR	53
UniProt.ws	419
Uniquorn	55
universalmotif	511
updateObject	44
UPDhmm	6
uSORT	48
VAExprs	44
VanillaICE	182
VarCon	42
variancePartition	944
VariantAnnotation	9423
VariantExperiment	48
VariantFiltering	88
VariantTools	168
vasp	3
VaSP	57
vbmp	73
VCFArray	58
VDJdive	47
Vega	11
VegaMC	51
velociraptor	117
veloviz	47
VennDetail	221
VERSO	46
vidger	96
viper	697
virtualArray	5
ViSEAGO	123
VisiumIO	8
vissE	97
Voyager	103
VplotR	54
vsclust	49
vsn	5274
vtpnet	72
vulcan	64
waddR	52
wateRmelon	730
wavClusteR	62
waveTiling	15
weaver	60
webbioc	62
weitrix	50
widgetInvoke	1
widgetTools	1269
wiggleplotr	167
wpm	54
wppi	46
Wrench	1639
XBSeq	9
XCIR	4
xcms	1855
xcore	45
XDE	64
Xeva	60
XINA	44
xmapbridge	55
xmapcore	2
XNAString	49
xps	15
XVector	47480
y2hStat	0
yamss	60
YAPSA	80
yaqcaffy	15
yarn	134
zellkonverter	1063
zenith	133
zFPKM	110
zinbwave	873
zlibbioc	50608
ZygosityPredictor	44