## ----eval = TRUE, echo=FALSE, results="hide", message = FALSE, warning = FALSE---- knitr::opts_chunk$set( collapse = TRUE, comment = "#>" ) suppressPackageStartupMessages({ library(DNAZooData) }) ## ----------------------------------------------------------------------------- library(DNAZooData) head(DNAZooData()) hicfile <- DNAZooData(species = 'Hypsibius_dujardini') S4Vectors::metadata(hicfile)$organism S4Vectors::metadata(hicfile)$assemblyURL ## ----eval = FALSE------------------------------------------------------------- # if (!require("BiocManager", quietly = TRUE)) # install.packages("BiocManager") # # BiocManager::install("DNAZooData") ## ----------------------------------------------------------------------------- availableResolutions(hicfile) availableChromosomes(hicfile) x <- import(hicfile, resolution = 10000, focus = 'HiC_scaffold_4') x interactions(x) as(x, 'ContactMatrix') ## ----------------------------------------------------------------------------- sessionInfo()