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stjudem

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see stjudem.

Microarray Data from Yeoh et al. in MACAT format


Bioconductor version: Release (3.18)

This is a microarray data set on acute lymphoblastic leukemia, published in 2002 (Yeoh et al.Cancer Cell 2002). The experiments were conducted in the St.Jude Children's Research Hospital, Memphis, Tenessee, USA. The raw data was preprocessed by variance stabilizing normalization (Huber et al.) on probe and subsequent summarization of probe expression values into probe set expression values using median polish.

Author: Benjamin Georgi, Matthias Heinig, Sebastian Schmeier, Joern Toedling

Maintainer: Joern Toedling <toedling at ebi.ac.uk>

Citation (from within R, enter citation("stjudem")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("stjudem")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews CancerData, ChipOnChipData, ExperimentData, LeukemiaCancerData, MicroarrayData
Version 1.42.0
License LGPL (>= 2)
Depends R (>= 2.10), utils
Imports
System Requirements
URL
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Depends On Me
Imports Me
Suggests Me macat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package stjudem_1.42.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/stjudem
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/stjudem
Package Short Url https://bioconductor.org/packages/stjudem/
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