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seqCNA.annot

This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see seqCNA.annot.

Annotation for the copy number analysis of deep sequencing cancer data with seqCNA


Bioconductor version: Release (3.18)

Provides annotation on GC content, mappability and genomic features for various genomes

Author: David Mosen-Ansorena

Maintainer: David Mosen-Ansorena <dmosen.gn at cicbiogune.es>

Citation (from within R, enter citation("seqCNA.annot")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("seqCNA.annot")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews CopyNumberVariationData, ExperimentData, Genome
Version 1.38.0
License GPL-3
Depends R (>= 2.10)
Imports
System Requirements
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Depends On Me seqCNA
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package seqCNA.annot_1.38.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/seqCNA.annot
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/seqCNA.annot
Package Short Url https://bioconductor.org/packages/seqCNA.annot/
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