JctSeqData

DOI: 10.18129/B9.bioc.JctSeqData    

Example Junction Count data for use with JunctionSeq

Bioconductor version: Release (3.8)

Junction count data from an example dataset taken from a subset of the RNA-seq reads from six samples. Data was subsampled and modified to provide edge cases for testing and to reduce file sizes.

Author: Stephen Hartley [aut, cre] (PhD)

Maintainer: Stephen Hartley <JunctionSeq-contact at list.nih.gov>

Citation (from within R, enter citation("JctSeqData")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("JctSeqData", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("JctSeqData")

 

PDF Example Walkthrough
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews ExperimentData, GEO, Genome, RNASeqData, Rattus_norvegicus_Data, RepositoryData
Version 1.12.0
License file LICENSE
Depends R (>= 3.3)
Imports
LinkingTo
Suggests knitr, BiocStyle, DESeq2, DEXSeq, edgeR, JunctionSeq
SystemRequirements
Enhances
URL http://hartleys.github.io/JunctionSeq/
BugReports http://github.com/hartleys/JunctionSeq/issues
Depends On Me
Imports Me
Suggests Me JunctionSeq
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package JctSeqData_1.12.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/JctSeqData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/JctSeqData
Package Short Url http://bioconductor.org/packages/JctSeqData/
Package Downloads Report Download Stats

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