## ----setup, echo=FALSE-------------------------------------------------------- options(width=80) ## ---- echo=FALSE-------------------------------------------------------------- avgs <- readRDS(system.file("extdata", "avgs.rds", package="GenomicScores")) ## ----retrieve2, message=FALSE, cache=FALSE, eval=FALSE------------------------ # availableGScores() ## ---- echo=FALSE-------------------------------------------------------------- avgs ## ----retrieve3, message=FALSE, cache=FALSE, eval=FALSE------------------------ # phast <- getGScores("phastCons30way.UCSC.hg38") ## ----retrieve4, message=FALSE, eval=FALSE------------------------------------- # gscores(phast, GRanges(seqnames="chr22", IRanges(start=50967020:50967025, width=1))) ## ----eval=FALSE--------------------------------------------------------------- # makeGScoresPackage(phast, maintainer="Me ", author="Me", version="1.0.0") ## ----echo=FALSE--------------------------------------------------------------- cat("Creating package in ./phastCons30way.UCSC.hg38\n") ## ----session_info, cache=FALSE------------------------------------------------ sessionInfo()