Contents

Compiled date: 2023-10-24

Last edited: 2022-08-02

License: GPL-3

1 Installation

Run the following code to install the Bioconductor version of package.

# install.packages("BiocManager")
BiocManager::install("POMA")

2 Load POMA

library(POMA)

3 Automatic EDA Report

The following function will return an Exploratory Data Analysis (EDA) HTML report. The input object must be a SummarizedExperiment object.

data("st000336")
PomaEDA(st000336)

Generated EDA HTML report starts here.

4 Know your data

4.1 Summary Tables

  Samples Features Covariates
1      57       31          1
  Number_Zeros Percentage_Zeros
1            0              0 %
  Number_Missings Percentage_Missings
1              61              3.45 %

4.2 Samples by Group

5 Normalization Plots

6 Group Distribution Plots