compounds_v1: serialization of compounds info from PharmacoDb v1
compounds_v1
tissues_v1
cell_lines_v1
datasets_v1
CCLE_drtsS4Vectors DataFrame instance
S4Vectors DataFrame instance
S4Vectors DataFrame instance
S4Vectors DataFrame instance
DRTraceSet instance
PharmacoDb Sept 2017
PharmacoDb Sept 2017
PharmacoDb Sept 2017
PharmacoDb Sept 2017
PharmacoDb April 2018
data(compounds_v1)
head(compounds_v1)
#> DataFrame with 6 rows and 2 columns
#> id name
#> <numeric> <character>
#> 1 1 (5Z)-7-Oxozeaenol
#> 2 2 16-beta-bromoandrost..
#> 3 3 17-AAG
#> 4 4 1S,3R-RSL-3
#> 5 5 3-Cl-AHPC
#> 6 6 5-FdUR
data(tissues_v1)
head(tissues_v1)
#> DataFrame with 6 rows and 2 columns
#> id name
#> <numeric> <character>
#> 1 1 adrenal_gland
#> 2 2 autonomic_ganglia
#> 3 3 biliary_tract
#> 4 4 blood
#> 5 5 bone
#> 6 6 brain
data(cell_lines_v1)
head(cell_lines_v1)
#> DataFrame with 6 rows and 2 columns
#> id name
#> <numeric> <character>
#> 1 1 105KC
#> 2 2 1321N1
#> 3 3 143B
#> 4 4 184A1
#> 5 5 184B5
#> 6 6 2004
data(datasets_v1)
head(datasets_v1)
#> DataFrame with 6 rows and 2 columns
#> id name
#> <numeric> <character>
#> 1 1 CCLE
#> 2 5 GDSC1000
#> 3 4 gCSI
#> 4 6 GRAY
#> 5 3 FIMM
#> 6 2 CTRPv2
data(CCLE_drts)
CCLE_drts
#> DRTraceSet for 5 cell lines, drug Irinotecan, dataset CCLE