ccfindR 1.5.0 ================ Changes: * Revised default meta_gene.cv(..., cv.max=Inf) * Added assignCelltype(...) ccfindR 1.4.1 ================ Changes: * Added URL to published article. * Revised optimal_rank(...) such that Bayes factor criterion is used. * Fixed filter_genes(...) for cases with non-expressed genes ccfindR 1.3.1 ================ Changes: * Changed definition of likelihood function in ML-NMF outputs from factorize(...) such that matrix elements with zero counts are included ccfindR 1.3.0 ================ Changes: * Added C++ code update step in vb_factorize(..., useC=TRUE) * Added Singular value decomposition initializer for vb_factorize(..., initializer='svd2') random initial condition: initializer='random' * Changed default: filter_genes(...,rescue.genes=FALSE) * Changed filter_genes(), vmr.min action from vmr >= vmr.min to vmr > vmr.min (removes genes with vmr=0) * Added parallel run for vb_factorize(..., ncores=10) * Added feature_map(...) ccfindR 1.0.0 (Release date: 2018-04-06) ================ Changes: * Split plot functionality from filter_genes() into plot_genes(). * Removed file name arguments from read_10x() and write_10x().