CHANGES IN VERSION 1.4.8 ------------------------ - fixed bug in lolliplot introduced by ensembl server changes CHANGES IN Version 1.4.7 ------------------------ - patch to fix possible conflicts between the rmvSilent=T and fileType="custom" parameter in waterfall() CHANGES IN Version 1.4.6 ------------------------ - fixed typo with new feature in cnFreq CHANGES IN VERSION 1.4.5 ------------------------ - fixed issue where plot would not render/take awhile for functions requiring a genome and using hg38 - Dramatically increased performance of cnFreq() - cnFreq() no longer requires genomic segments to be identical across samples - cnFreq() can now selectively plot chromosomes - cnFreq() can now plot both frequency/proportion regardless of data input type CHANGES IN VERSION 1.4.4 ------------------------ - fixed bug where incorrect cell labels were overlayed with proper ones when removing silent mutations CHANGES IN VERSION 1.4.3 ------------------------ - fixed bug in cnFreq where cnFreq would produce an error (improperly) when looking for consistent windows CHANGES IN VERSION 1.4.2 ------------------------ - fixed bug caused by updates to gridExtra when using genCov CHANGES IN VERSION 1.4.1 ------------------------ - patch to fix alignments due to ggplot2 update CHANGES IN VERSION 1.4.0 -------------------------- - Added new functionality to waterfall() - Transitions and transverions can be plotted as a waterfall subplot - mutation type proportions can now be plotted as a waterfall subplot - minor bug fixes to waterfall