Changes in version 1.3.0 - Added introns_ALK_EML4() - Added find_variants() - Updated break_position_depth() - Updated break_position() - Refined EML4_ALK_detection() - Updated vignette to include new functions - Cleaned functions for Bioconductor 3.17 release Changes in version 1.1.1 - Updated example files to include ALK reads Changes in version 1.1.0 - Updated DESCRIPTION Changes in version 1.0.0 - Bioconductor 3.16 release Changes in version 0.99.3 - Updated DESCRIPTION Changes in version 0.99.2 - Review from Bioconductor Changes in version 0.99.1 - Changed the output of EML4_ALK_detection() from data.frame to GAlignments object - Adjusted the other functions, vignettes, tests and man accordingly Changes in version 0.99.0 - DNAfusion takes BAM file as input and identifies EML4-ALK gene fusions - Submitted to Bioconductor.