yaqcaffy

DOI: 10.18129/B9.bioc.yaqcaffy    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Affymetrix expression data quality control and reproducibility analysis

Bioconductor version: Release (3.13)

Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("yaqcaffy")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("yaqcaffy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Microarray, OneChannel, QualityControl, ReportWriting, Software
Version 1.52.0
In Bioconductor since BioC 2.2 (R-2.7) (13.5 years)
License Artistic-2.0
Depends simpleaffy (>= 2.19.3), methods
Imports stats4
LinkingTo
Suggests MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/yaqcaffy
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/yaqcaffy
Package Short Url https://bioconductor.org/packages/yaqcaffy/
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