vasp

DOI: 10.18129/B9.bioc.vasp    

Quantification and Visulization of Variations of Splicing in Population

Bioconductor version: Release (3.12)

Discovery of genome-wide variable alternative splicing events from short-read RNA-seq data and visualizations of gene splicing information for publication-quality multi-panel figures.

Author: Huihui Yu, Qian Du, Chi Zhang

Maintainer: Huihui Yu <yuhuihui2011 at foxmail.com>

Citation (from within R, enter citation("vasp")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("vasp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vasp")

 

PDF manual.pdf
HTML R Script Variations of Splicing in Population
PDF   Reference Manual
Text   NEWS

Details

biocViews AlternativeSplicing, Clustering, DifferentialExpression, DifferentialSplicing, ImmunoOncology, KEGG, Preprocessing, RNASeq, Software, StatisticalMethod, Visualization
Version 1.2.0
In Bioconductor since BioC 3.11 (R-4.0) (0.5 years)
License GPL (>= 2.0)
Depends R (>= 4.0), ballgown
Imports IRanges, GenomicRanges, S4Vectors, Sushi, parallel, matrixStats, GenomicAlignments, GenomeInfoDb, Rsamtools, cluster, stats, graphics, methods
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/yuhuihui2011/vasp
BugReports https://github.com/yuhuihui2011/vasp/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package vasp_1.2.0.tar.gz
Windows Binary vasp_1.1.0.zip
macOS 10.13 (High Sierra) vasp_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/vasp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/vasp
Package Short Url https://bioconductor.org/packages/vasp/
Package Downloads Report Download Stats

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