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This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see multiSight.

Multi-omics Classification, Functional Enrichment and Network Inference analysis

Bioconductor version: Release (3.18)

multiSight is an R package providing functions to analyze your omic datasets in a multi-omics manner based on Stouffer's p-value pooling and multi-block statistical methods. For each omic dataset you furnish, multiSight provides classification models with feature selection you can use as biosignature: (i) To forecast phenotypes (e.g. to diagnostic tasks, histological subtyping), (ii) To design Pathways and gene ontology enrichments (Over Representation Analysis), (iii) To build Network inference linked to PubMed querying to make assumptions easier and data-driven. Main analysis are embedded in an user-friendly graphical interface.

Author: Florian Jeanneret [cre, aut] , Stephane Gazut [aut]

Maintainer: Florian Jeanneret <florian.jeanneret at cea.fr>

Citation (from within R, enter citation("multiSight")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews Classification, DifferentialExpression, GeneSetEnrichment, Network, NetworkInference, Pathways, RNASeq, Software, miRNA
Version 1.10.0
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License CeCILL + file LICENSE
Depends R (>= 4.1)
Imports golem, config, R6, shiny, shinydashboard, DT, dplyr, stringr, anyLib, caret, biosigner, mixOmics, stats, DESeq2, clusterProfiler, rWikiPathways, ReactomePA, enrichplot, ppcor, metap, infotheo, igraph, networkD3, easyPubMed, utils, htmltools, rmarkdown, ggnewscale
System Requirements
Bug Reports https://github.com/Fjeanneret/multiSight/issues
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Suggests org.Mm.eg.db, rlang, markdown, attempt, processx, testthat, knitr, BiocStyle
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Source Repository git clone https://git.bioconductor.org/packages/multiSight
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/multiSight
Package Short Url https://bioconductor.org/packages/multiSight/
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