iteremoval

DOI: 10.18129/B9.bioc.iteremoval    

Iteration removal method for feature selection

Bioconductor version: Release (3.7)

The package provides a flexible algorithm to screen features of two distinct groups in consideration of overfitting and overall performance. It was originally tailored for methylation locus screening of NGS data, and it can also be used as a generic method for feature selection. Each step of the algorithm provides a default method for simple implemention, and the method can be replaced by a user defined function.

Author: Jiacheng Chuan [aut, cre]

Maintainer: Jiacheng Chuan <jiacheng_chuan at outlook.com>

Citation (from within R, enter citation("iteremoval")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("iteremoval")

Documentation

HTML R Script An introduction to iteremoval
PDF   Reference Manual
Text   NEWS

Details

biocViews Software, StatisticalMethod
Version 1.0.0
License GPL-2
Depends R (>= 3.5.0), ggplot2 (>= 2.2.1)
Imports magrittr, graphics, utils, GenomicRanges, SummarizedExperiment
LinkingTo
Suggests testthat, knitr
SystemRequirements
Enhances
URL https://github.com/cihga39871/iteremoval
BugReports https://github.com/cihga39871/iteremoval/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iteremoval_1.0.0.tar.gz
Windows Binary iteremoval_1.0.0.zip
Mac OS X 10.11 (El Capitan) iteremoval_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iteremoval
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iteremoval
Package Short Url http://bioconductor.org/packages/iteremoval/
Package Downloads Report Download Stats

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