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genbankr

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see genbankr.

Parsing GenBank files into semantically useful objects


Bioconductor version: Release (3.18)

Reads Genbank files.

Author: Gabriel Becker [aut, cre], Michael Lawrence [aut]

Maintainer: Gabriel Becker <becker.gabriel at gene.com>

Citation (from within R, enter citation("genbankr")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("genbankr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DataImport, Infrastructure, Software
Version 1.30.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License Artistic-2.0
Depends methods
Imports BiocGenerics, IRanges(>= 2.13.15), GenomicRanges(>= 1.31.10), GenomicFeatures(>= 1.31.5), Biostrings, VariantAnnotation, rtracklayer, S4Vectors(>= 0.17.28), GenomeInfoDb, Biobase
System Requirements
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Suggests RUnit, rentrez, knitr, rmarkdown, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/genbankr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/genbankr
Package Short Url https://bioconductor.org/packages/genbankr/
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