focalCall

DOI: 10.18129/B9.bioc.focalCall    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Detection of focal aberrations in DNA copy number data

Bioconductor version: Release (3.12)

Detection of genomic focal aberrations in high-resolution DNA copy number data

Author: Oscar Krijgsman

Maintainer: Oscar Krijgsman <oscarkrijgsman at gmail.com>

Citation (from within R, enter citation("focalCall")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("focalCall")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Microarray, Preprocessing, Sequencing, Software, Visualization
Version 1.24.0
In Bioconductor since BioC 3.0 (R-3.1) (6 years)
License GPL-2
Depends R (>= 2.10.0), CGHcall
Imports
LinkingTo
Suggests RUnit, BiocGenerics
SystemRequirements
Enhances
URL https://github.com/OscarKrijgsman/focalCall
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/focalCall
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/focalCall
Package Short Url https://bioconductor.org/packages/focalCall/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: