DOI: 10.18129/B9.bioc.condcomp    

Condition Comparison in scRNA-seq Data

Bioconductor version: Release (3.8)

For a given clustered data, which can also be split into two conditions, this package provides a way to perform a condition comparison on said clustered data. The comparison is performed on each cluster. Several statistics are used and, when analysed in conjunction, they might give some insight regarding the heterogeneity of some of the clusters.

Author: Diogo P. P. Branco [aut, cre]

Maintainer: Diogo P. P. Branco <diogo.pp.branco at>

Citation (from within R, enter citation("condcomp")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("condcomp", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script scRNA-seq data heterogeneity with condcomp
PDF   Reference Manual


biocViews Clustering, ImmunoOncology, SingleCell, Software, Visualization
Version 1.0.1
License GPL (>=2) | file LICENSE
Depends R (>= 3.5.0)
Imports cluster, ggplot2, ggrepel, outliers
Suggests testthat, knitr, rmarkdown, BiocStyle, Matrix, Seurat, monocle, HSMMSingleCell
Depends On Me
Imports Me
Suggests Me
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package condcomp_1.0.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) condcomp_1.0.1.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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Old Source Packages for BioC 3.8 Source Archive

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