To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("anamiR")

In most cases, you don't need to download the package archive at all.

anamiR

 

   

An integrated analysis package of miRNA and mRNA expression data

Bioconductor version: Release (3.4)

This package is intended to identify potential interactions of miRNA-target gene interactions from miRNA and mRNA expression data. It contains functions for statistical test, databases of miRNA-target gene interaction and functional analysis.

Author: Ti-Tai Wang [aut, cre], Tzu-Pin Lu [aut], Chien-Yueh Lee[ctb,] Eric Y. Chuang [aut]

Maintainer: Ti-Tai Wang <r04945002 at ntu.edu.tw>

Citation (from within R, enter citation("anamiR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("anamiR")

Documentation

HTML R Script Introduction to anamiR
PDF   Reference Manual
Text   NEWS

Details

biocViews AssayDomain, BiologicalQuestion, DifferentialExpression, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneTarget, Genetics, Microarray, Normalization, Pathways, ResearchField, Sequencing, Software, Technology, WorkflowStep, miRNA
Version 1.0.1
In Bioconductor since BioC 3.4 (R-3.3) (< 6 months)
License GPL-2
Depends R (>= 3.3.1), SummarizedExperiment(>= 1.1.6)
Imports stats, DBI, limma, lumi, agricolae, RMySQL, DESeq2, SummarizedExperiment, gplots
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/AllenTiTaiWang/anamiR
BugReports https://github.com/AllenTiTaiWang/anamiR/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source anamiR_1.0.1.tar.gz
Windows Binary anamiR_1.0.1.zip
Mac OS X 10.9 (Mavericks) anamiR_1.0.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/anamiR/tree/release-3.4
Package Short Url http://bioconductor.org/packages/anamiR/
Package Downloads Report Download Stats

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