OGSA

DOI: 10.18129/B9.bioc.OGSA    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

Outlier Gene Set Analysis

Bioconductor version: Release (3.12)

OGSA provides a global estimate of pathway deregulation in cancer subtypes by integrating the estimates of significance for individual pathway members that have been identified by outlier analysis.

Author: Michael F. Ochs <ochsm at tcnj.edu>

Maintainer: Michael F. Ochs <ochsm at tcnj.edu>

Citation (from within R, enter citation("OGSA")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OGSA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews CopyNumberVariation, GeneExpression, Microarray, Software
Version 1.20.0
In Bioconductor since BioC 3.2 (R-3.2) (5 years)
License GPL (== 2)
Depends R (>= 3.2.0)
Imports gplots (>= 2.8.0), limma(>= 3.18.13), Biobase
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/OGSA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OGSA
Package Short Url https://bioconductor.org/packages/OGSA/
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