Welcome to the new bioconductor.org!

GISPA

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GISPA.

GISPA: Method for Gene Integrated Set Profile Analysis


Bioconductor version: Release (3.18)

GISPA is a method intended for the researchers who are interested in defining gene sets with similar, a priori specified molecular profile. GISPA method has been previously published in Nucleic Acid Research (Kowalski et al., 2016; PMID: 26826710).

Author: Bhakti Dwivedi and Jeanne Kowalski

Maintainer: Bhakti Dwivedi <bhakti.dwivedi at emory.edu>

Citation (from within R, enter citation("GISPA")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GISPA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GISPA")
GISPA:Method for Gene Integrated Set Profile Analysis HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneSetEnrichment, GenomeWideAssociation, Software, StatisticalMethod
Version 1.26.0
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License GPL-2
Depends R (>= 3.5)
Imports Biobase, changepoint, data.table, genefilter, graphics, GSEABase, HH, lattice, latticeExtra, plyr, scatterplot3d, stats
System Requirements
URL
See More
Suggests knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GISPA_1.26.0.tar.gz
Windows Binary GISPA_1.26.0.zip
macOS Binary (x86_64) GISPA_1.26.0.tgz
macOS Binary (arm64) GISPA_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GISPA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GISPA
Package Short Url https://bioconductor.org/packages/GISPA/
Package Downloads Report Download Stats