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This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see DeepBlueR.


Bioconductor version: Release (3.18)

Accessing the DeepBlue Epigenetics Data Server through R.

Author: Felipe Albrecht, Markus List

Maintainer: Felipe Albrecht <felipe.albrecht at mpi-inf.mpg.de>, Markus List <markus.list at tum.de>, Quirin Manz <quirin.manz at tum.de>

Citation (from within R, enter citation("DeepBlueR")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

The DeepBlue epigenomic data server - R package HTML R Script
Reference Manual PDF


biocViews Annotation, CpGIsland, DNAMethylation, DataImport, DataRepresentation, Epigenetics, GeneRegulation, GenomeAnnotation, ImmunoOncology, Preprocessing, Software, ThirdPartyClient
Version 1.27.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL (>=2.0)
Depends R (>= 3.3), XML, RCurl
Imports GenomicRanges, data.table, stringr, diffr, dplyr, methods, rjson, utils, R.utils, foreach, withr, rtracklayer, GenomeInfoDb, settings, filehash
System Requirements
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Suggests knitr, rmarkdown, LOLA, Gviz, gplots, ggplot2, tidyr, RColorBrewer, matrixStats
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DeepBlueR_1.27.0.tar.gz
Windows Binary DeepBlueR_1.27.0.zip (64-bit only)
macOS Binary (x86_64) DeepBlueR_1.27.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/DeepBlueR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DeepBlueR
Bioc Package Browser https://code.bioconductor.org/browse/DeepBlueR/
Package Short Url https://bioconductor.org/packages/DeepBlueR/
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