CoRegFlux

DOI: 10.18129/B9.bioc.CoRegFlux    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

CoRegFlux

Bioconductor version: Release (3.13)

CoRegFlux aims at providing tools to integrate reverse engineered gene regulatory networks and gene-expression into metabolic models to improve prediction of phenotypes, both for metabolic engineering, through transcription factor or gene (TF) knock-out or overexpression in various conditions as well as to improve our understanding of the interactions and cell inner-working.

Author: Pauline Trébulle, Daniel Trejo-Banos, Mohamed Elati

Maintainer: Pauline Trébulle and Mohamed Elati <coregflux at gmail.com>

Citation (from within R, enter citation("CoRegFlux")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CoRegFlux")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews GeneExpression, GenePrediction, GeneRegulation, Network, Software, SystemsBiology, Transcription
Version 1.8.0
In Bioconductor since BioC 3.9 (R-3.6) (2.5 years)
License GPL-3
Depends R (>= 3.6)
Imports CoRegNet, sybil
LinkingTo
Suggests glpkAPI, testthat, knitr, rmarkdown, digest, R.cache, ggplot2, plyr, igraph, methods, latex2exp, rBayesianOptimization
SystemRequirements GLPK (>= 4.42)
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/CoRegFlux
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CoRegFlux
Package Short Url https://bioconductor.org/packages/CoRegFlux/
Package Downloads Report Download Stats

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