| counts | A count matrix, used for testing. |
| crv | A SlingshotDataset object, used for testing. |
| lines-method | Plot Slingshot output |
| plot-method | Plot Slingshot output |
| plot-SlingshotDataSet | Plot Slingshot output |
| plot3d-SlingshotDataSet | Plot Slingshot output in 3D |
| plot3d.SlingshotDataSet | Plot Slingshot output in 3D |
| plotExpression | Plot gene expression along pseudotime. |
| plotExpression-method | Plot gene expression along pseudotime. |
| plotGeneCount | Plot gene expression in reduced dimension. |
| plotGeneCount-method | Plot gene expression in reduced dimension. |
| plotSmoothers | Plot the log-transformed counts and the fitted values for a particular gene along all lineages |
| plotSmoothers-method | Plot the log-transformed counts and the fitted values for a particular gene along all lineages |
| sce | A SingleCellExperiment object, used for testing. |