Two-Tier Mapper: a clustering tool based on topological data analysis

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Documentation for package ‘TTMap’ version 1.30.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

TTMap-package	Two-Tier Mapper: a clustering tool based on topological data analysis
calcul_e	Calculation of the value of epsilon
calcul_e_single	Calculation of the value of epsilon
control_adjustment	Calculates a corrected control group, discovers outliers in it.
generate_correlation	Generates different distance matrices
generate_euclidean	Generates different distance matrices
generate_mismatch_distance	Generates different distance matrices
generate_p_val_correlation	Generates different distance matrices
generate_single_cell_complete_mismatch	Generates different distance matrices
generate_single_cell_mismatch_with_parameter	Generates different distance matrices
hyperrectangle_deviation_assessment	Calculation of deviation components
make_matrices	Prepares the matrices for 'control_adjustment'
make_matrices-method	Prepares the matrices for 'control_adjustment'
make_matrices-methods	Prepares the matrices for 'control_adjustment'
mat2pcl	Reading, writing and annotation files
read_pcl	Reading, writing and annotation files
TTMap	Two-Tier Mapper: a clustering tool based on topological data analysis
ttmap	Visualisation of the clustering
ttmap_sgn_genes	Gives a list of associated genes per cluster
ttmap_sgn_genes_inter	Gives a list of associated genes per cluster
ttmap_sgn_genes_inter2	Gives a list of associated genes per cluster
write_pcl	Reading, writing and annotation files