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pcxnData

Correlation coefficients and p values between pre-defined pathway/gene sets


Bioconductor version: Release (3.18)

PCxN database contains correlation coefficients and p values between pre-defined gene sets within MSigDB H hallmark gene sets, MSigDB C2 CP (Canonical pathways), MSigDB C5 GO BP gene sets and Pathprint respectively, as well as adjusted pathway correlations to account for the shared genes between pathway pairs.

Author: Sokratis Kariotis, Yered Pita-Juarez, Wenbin Wei, Winston Hide

Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>

Citation (from within R, enter citation("pcxnData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pcxnData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pcxnData")
pcxnData PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExpressionData, GEO, Homo_sapiens_Data, MicroarrayData, OneChannelData, PathwayInteractionDatabase
Version 2.24.0
License MIT + file LICENSE
Depends R (>= 3.4)
Imports
System Requirements
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Suggests pcxn
Linking To
Enhances
Depends On Me pcxn
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package pcxnData_2.24.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/pcxnData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pcxnData
Package Short Url https://bioconductor.org/packages/pcxnData/
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