See download stats for: Bioconductor annotation packages Bioconductor experiment packages Bioconductor workflow packages

Download stats for Bioconductor software packages

This page was generated on 2026-07-07 12:48:18 -0400 (Tue, 07 Jul 2026).

The number reported next to each package name is the download score, that is, the average number of distinct IPs that “hit” the package each month for the last 12 months (not counting the current month).

Top 75

1	BiocVersion (73242)
2	BiocGenerics (71396)
3	S4Vectors (68526)
4	IRanges (65256)
5	Biobase (60982)
6	XVector (60924)
7	BiocParallel (60698)
8	SparseArray (56676)
9	Biostrings (55315)
10	GenomicRanges (54001)
11	DelayedArray (53511)
12	SummarizedExperiment (50480)
13	S4Arrays (50329)
14	MatrixGenerics (50023)
15	GenomeInfoDb (47208)
16	AnnotationDbi (45134)
17	KEGGREST (44043)
18	limma (41797)
19	Seqinfo (33477)
20	ggtree (32779)
21	UCSC.utils (31817)
22	DESeq2 (30278)
23	treeio (29826)
24	BiocFileCache (29776)
25	Rsamtools (29767)

26	edgeR (28838)
27	fgsea (28710)
28	enrichplot (28217)
29	Rhdf5lib (27642)
30	clusterProfiler (27176)
31	Rhtslib (26863)
32	DOSE (26570)
33	rhdf5 (26563)
34	qvalue (25819)
35	GenomicAlignments (25697)
36	GOSemSim (25156)
37	rhdf5filters (24847)
38	biomaRt (24480)
39	graph (24431)
40	rtracklayer (24429)
41	zlibbioc (23368)
42	ComplexHeatmap (22344)
43	SingleCellExperiment (21973)
44	BiocIO (21952)
45	annotate (21203)
46	beachmat (20299)
47	sparseMatrixStats (19408)
48	GenomicFeatures (19014)
49	DelayedMatrixStats (18354)
50	HDF5Array (18264)

51	assorthead (17493)
52	preprocessCore (17447)
53	BiocSingular (16667)
54	ScaledMatrix (15848)
55	AnnotationHub (14513)
56	genefilter (14467)
57	BiocNeighbors (14308)
58	BSgenome (14064)
59	GEOquery (14004)
60	multtest (13504)
61	impute (13381)
62	ProtGenerics (12983)
63	BiocBaseUtils (12883)
64	h5mread (12854)
65	AnnotationFilter (12684)
66	GSEABase (12291)
67	scuttle (12008)
68	cigarillo (11065)
69	GSVA (10856)
70	ensembldb (10775)
71	Rgraphviz (10675)
72	RBGL (10316)
73	sva (10282)
74	ExperimentHub (10157)
75	scater (9993)

All software packages

All software package stats in one file: bioc_pkg_stats.tab

All software package download scores in one file: bioc_pkg_scores.tab

See Download stats for Bioconductor software repository (all packages combined)

*

	**BiocGenerics (1)
	**Biostrings (1)

	**GSVA (1)
	**rhdf5 (1)

**S4Vectors (0)

.

... (1)

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0

	0 (1)
	0.12.6 (1)
	0.46.0 (1)

	0000000000000000 (1)
	00Seq (1)
	00TABLE (0)

	01 (1)
	0mnipathR (1)

1

	1 (1)
	1.0.11 (1)
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	1.3.0 (1)

	1.30.0 (1)
	1.36.0 (1)
	1.42.0 (1)
	1.48.0 (1)

	1.5.9 (1)
	127. (1)
	1imma (0)

=

	======= (1)
	================================================================ (1)

	================================================================== (1)
	============================================================================= (1)

A

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	AlphaBeta (303)
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	AlphaMissenseR (222)
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	AlphaSimR (1)

	alphavantager (1)
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	animation (1)
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	anndataR (808)
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	argusDS.gamboostLSS (0)
	argusDS.gamlss.distributions (1)
	argusDS.gamlss.forecast (1)
	argusDS.gamlss.modelling (1)
	argusDS.gamlss.smoothers (0)
	argusDS.gamlss.testing (1)
	argusDS.gamlss.utils (1)
	argusDS.GlobalSettings (0)
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