This package provides annotation data for the Heterorhabditis bacteriophora organism. It includes gene information, functional annotations, and kegg pathway information derived from the Wormbase Parasite and various other biological databases.
# Installation
if (!requireNamespace("BiocManager", quietly = TRUE)) {
install.packages("BiocManager")
}
BiocManager::install(version = "devel")
if (!requireNamespace("AnnotationHub", quietly = TRUE)) {
install.packages("AnnotationHub")
}# Loading the Package
library(AnnotationHub)## Loading required package: BiocGenerics## Loading required package: generics##
## Attaching package: 'generics'## The following objects are masked from 'package:base':
##
## as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
## setequal, union##
## Attaching package: 'BiocGenerics'## The following objects are masked from 'package:stats':
##
## IQR, mad, sd, var, xtabs## The following objects are masked from 'package:base':
##
## Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
## as.data.frame, basename, cbind, colnames, dirname, do.call,
## duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
## mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
## rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
## unsplit, which.max, which.min## Loading required package: BiocFileCache## Loading required package: dbplyr# Installing the org.Hbacteriophora.eg.db package
ah <- AnnotationHub()
org.Hbacteriophora.eg.db <- ah[["AH121717"]]## downloading 1 resources## retrieving 1 resource## loading from cache## Loading required package: AnnotationDbi## Loading required package: stats4## Loading required package: Biobase## Welcome to Bioconductor
##
## Vignettes contain introductory material; view with
## 'browseVignettes()'. To cite Bioconductor, see
## 'citation("Biobase")', and for packages 'citation("pkgname")'.##
## Attaching package: 'Biobase'## The following object is masked from 'package:AnnotationHub':
##
## cache## Loading required package: IRanges## Loading required package: S4Vectors##
## Attaching package: 'S4Vectors'## The following object is masked from 'package:utils':
##
## findMatches## The following objects are masked from 'package:base':
##
## I, expand.grid, unname# List all supported key types
keytypes(org.Hbacteriophora.eg.db)## [1] "EVIDENCE" "EVIDENCEALL" "GENENAME" "GID" "GO"
## [6] "GOALL" "KEGGPATHWAY" "ONTOLOGY" "ONTOLOGYALL" "SYMBOL"# Accessing Gene Information
keys <- head(keys(org.Hbacteriophora.eg.db,
keytype = "GID")) # Get sample gene IDs
select(org.Hbacteriophora.eg.db,
keys = keys,
columns = c("GENENAME", "SYMBOL"),
keytype = "GID")## 'select()' returned 1:1 mapping between keys and columns## GID
## 1 Hba_00001
## 2 Hba_00004
## 3 Hba_00009
## 4 Hba_00010
## 5 Hba_00017
## 6 Hba_00018
## GENENAME
## 1 Pao retrotransposon peptidase
## 2 Receptor family ligand binding region
## 3 ABC-2 type transporter
## 4 ABC-2 type transporter
## 5 NNMT/PNMT/TEMT family
## 6 Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain
## SYMBOL
## 1 Not Available
## 2 Not Available
## 3 wht-7
## 4 wht-7
## 5 NNMT
## 6 TUBA3E# Querying GO Terms
select(org.Hbacteriophora.eg.db,
keys = keys,
columns = c("GO", "ONTOLOGY"),
keytype = "GID")## 'select()' returned 1:many mapping between keys and columns## GID GO ONTOLOGY
## 1 Hba_00001 <NA> <NA>
## 2 Hba_00004 GO:0035556 BP
## 3 Hba_00004 GO:0016829 MF
## 4 Hba_00004 GO:0009190 BP
## 5 Hba_00009 GO:0000003 BP
## 6 Hba_00009 GO:0001408 BP
## 7 Hba_00009 GO:0001409 MF
## 8 Hba_00009 GO:0001504 BP
## 9 Hba_00009 GO:0001505 BP
## 10 Hba_00009 GO:0003008 BP
## 11 Hba_00009 GO:0003674 MF
## 12 Hba_00009 GO:0003824 MF
## 13 Hba_00009 GO:0005215 MF
## 14 Hba_00009 GO:0005275 MF
## 15 Hba_00009 GO:0005345 MF
## 16 Hba_00009 GO:0005346 MF
## 17 Hba_00009 GO:0005575 CC
## 18 Hba_00009 GO:0005622 CC
## 19 Hba_00009 GO:0005737 CC
## 20 Hba_00009 GO:0005886 CC
## 21 Hba_00009 GO:0006576 BP
## 22 Hba_00009 GO:0006725 BP
## 23 Hba_00009 GO:0006726 BP
## 24 Hba_00009 GO:0006727 BP
## 25 Hba_00009 GO:0006807 BP
## 26 Hba_00009 GO:0006810 BP
## 27 Hba_00009 GO:0006811 BP
## 28 Hba_00009 GO:0006812 BP
## 29 Hba_00009 GO:0006820 BP
## 30 Hba_00009 GO:0006836 BP
## 31 Hba_00009 GO:0006856 BP
## 32 Hba_00009 GO:0006862 BP
## 33 Hba_00009 GO:0006863 BP
## 34 Hba_00009 GO:0007610 BP
## 35 Hba_00009 GO:0007611 BP
## 36 Hba_00009 GO:0007613 BP
## 37 Hba_00009 GO:0007617 BP
## 38 Hba_00009 GO:0007618 BP
## 39 Hba_00009 GO:0007619 BP
## 40 Hba_00009 GO:0008049 BP
## 41 Hba_00009 GO:0008055 BP
## 42 Hba_00009 GO:0008150 BP
## 43 Hba_00009 GO:0008152 BP
## 44 Hba_00009 GO:0008509 MF
## 45 Hba_00009 GO:0008514 MF
## 46 Hba_00009 GO:0008558 MF
## 47 Hba_00009 GO:0009058 BP
## 48 Hba_00009 GO:0009308 BP
## 49 Hba_00009 GO:0009309 BP
## 50 Hba_00009 GO:0009605 BP
## 51 Hba_00009 GO:0009628 BP
## 52 Hba_00009 GO:0009629 BP
## 53 Hba_00009 GO:0009987 BP
## 54 Hba_00009 GO:0015075 MF
## 55 Hba_00009 GO:0015205 MF
## 56 Hba_00009 GO:0015208 MF
## 57 Hba_00009 GO:0015215 MF
## 58 Hba_00009 GO:0015216 MF
## 59 Hba_00009 GO:0015399 MF
## 60 Hba_00009 GO:0015605 MF
## 61 Hba_00009 GO:0015711 BP
## 62 Hba_00009 GO:0015748 BP
## 63 Hba_00009 GO:0015837 BP
## 64 Hba_00009 GO:0015842 BP
## 65 Hba_00009 GO:0015851 BP
## 66 Hba_00009 GO:0015854 BP
## 67 Hba_00009 GO:0015865 BP
## 68 Hba_00009 GO:0015868 BP
## 69 Hba_00009 GO:0015931 BP
## 70 Hba_00009 GO:0015932 MF
## 71 Hba_00009 GO:0016020 CC
## 72 Hba_00009 GO:0016462 MF
## 73 Hba_00009 GO:0016787 MF
## 74 Hba_00009 GO:0016817 MF
## 75 Hba_00009 GO:0016818 MF
## 76 Hba_00009 GO:0016887 MF
## 77 Hba_00009 GO:0017111 MF
## 78 Hba_00009 GO:0018130 BP
## 79 Hba_00009 GO:0019098 BP
## 80 Hba_00009 GO:0019438 BP
## 81 Hba_00009 GO:0019748 BP
## 82 Hba_00009 GO:0019953 BP
## 83 Hba_00009 GO:0022414 BP
## 84 Hba_00009 GO:0022804 MF
## 85 Hba_00009 GO:0022857 MF
## 86 Hba_00009 GO:0031090 CC
## 87 Hba_00009 GO:0031410 CC
## 88 Hba_00009 GO:0031982 CC
## 89 Hba_00009 GO:0032501 BP
## 90 Hba_00009 GO:0032504 BP
## 91 Hba_00009 GO:0033060 BP
## 92 Hba_00009 GO:0034220 BP
## 93 Hba_00009 GO:0034641 BP
## 94 Hba_00009 GO:0040011 BP
## 95 Hba_00009 GO:0042330 BP
## 96 Hba_00009 GO:0042332 BP
## 97 Hba_00009 GO:0042401 BP
## 98 Hba_00009 GO:0042440 BP
## 99 Hba_00009 GO:0042441 BP
## 100 Hba_00009 GO:0042626 MF
## 101 Hba_00009 GO:0043226 CC
## 102 Hba_00009 GO:0043227 CC
## 103 Hba_00009 GO:0043229 CC
## 104 Hba_00009 GO:0043324 BP
## 105 Hba_00009 GO:0043473 BP
## 106 Hba_00009 GO:0043474 BP
## 107 Hba_00009 GO:0044237 BP
## 108 Hba_00009 GO:0044249 BP
## 109 Hba_00009 GO:0044271 BP
## 110 Hba_00009 GO:0044550 BP
## 111 Hba_00009 GO:0044703 BP
## 112 Hba_00009 GO:0045117 BP
## 113 Hba_00009 GO:0046148 BP
## 114 Hba_00009 GO:0046152 BP
## 115 Hba_00009 GO:0046158 BP
## 116 Hba_00009 GO:0046483 BP
## 117 Hba_00009 GO:0048066 BP
## 118 Hba_00009 GO:0048069 BP
## 119 Hba_00009 GO:0048072 BP
## 120 Hba_00009 GO:0048609 BP
## 121 Hba_00009 GO:0048770 CC
## 122 Hba_00009 GO:0050877 BP
## 123 Hba_00009 GO:0050890 BP
## 124 Hba_00009 GO:0050896 BP
## 125 Hba_00009 GO:0051179 BP
## 126 Hba_00009 GO:0051234 BP
## 127 Hba_00009 GO:0051608 BP
## 128 Hba_00009 GO:0051615 BP
## 129 Hba_00009 GO:0051641 BP
## 130 Hba_00009 GO:0051649 BP
## 131 Hba_00009 GO:0055085 BP
## 132 Hba_00009 GO:0060179 BP
## 133 Hba_00009 GO:0065007 BP
## 134 Hba_00009 GO:0065008 BP
## 135 Hba_00009 GO:0070729 BP
## 136 Hba_00009 GO:0070731 BP
## 137 Hba_00009 GO:0071702 BP
## 138 Hba_00009 GO:0071704 BP
## 139 Hba_00009 GO:0071705 BP
## 140 Hba_00009 GO:0071944 CC
## 141 Hba_00009 GO:0072530 BP
## 142 Hba_00009 GO:0090741 CC
## 143 Hba_00009 GO:0097708 CC
## 144 Hba_00009 GO:0098588 CC
## 145 Hba_00009 GO:0098656 BP
## 146 Hba_00009 GO:0098657 BP
## 147 Hba_00009 GO:0098700 BP
## 148 Hba_00009 GO:0099504 BP
## 149 Hba_00009 GO:1901264 BP
## 150 Hba_00009 GO:1901360 BP
## 151 Hba_00009 GO:1901362 BP
## 152 Hba_00009 GO:1901505 MF
## 153 Hba_00009 GO:1901564 BP
## 154 Hba_00009 GO:1901566 BP
## 155 Hba_00009 GO:1901576 BP
## 156 Hba_00009 GO:1901679 BP
## 157 Hba_00009 GO:1903716 BP
## 158 Hba_00009 GO:1903790 BP
## 159 Hba_00009 GO:1904823 BP
## 160 Hba_00009 GO:1905948 MF
## 161 Hba_00009 GO:0140359 MF
## 162 Hba_00010 GO:0000003 BP
## 163 Hba_00010 GO:0001408 BP
## 164 Hba_00010 GO:0001409 MF
## 165 Hba_00010 GO:0001504 BP
## 166 Hba_00010 GO:0001505 BP
## 167 Hba_00010 GO:0003008 BP
## 168 Hba_00010 GO:0003674 MF
## 169 Hba_00010 GO:0003824 MF
## 170 Hba_00010 GO:0005215 MF
## 171 Hba_00010 GO:0005275 MF
## 172 Hba_00010 GO:0005345 MF
## 173 Hba_00010 GO:0005346 MF
## 174 Hba_00010 GO:0005575 CC
## 175 Hba_00010 GO:0005622 CC
## 176 Hba_00010 GO:0005737 CC
## 177 Hba_00010 GO:0005886 CC
## 178 Hba_00010 GO:0006576 BP
## 179 Hba_00010 GO:0006725 BP
## 180 Hba_00010 GO:0006726 BP
## 181 Hba_00010 GO:0006727 BP
## 182 Hba_00010 GO:0006807 BP
## 183 Hba_00010 GO:0006810 BP
## 184 Hba_00010 GO:0006811 BP
## 185 Hba_00010 GO:0006812 BP
## 186 Hba_00010 GO:0006820 BP
## 187 Hba_00010 GO:0006836 BP
## 188 Hba_00010 GO:0006856 BP
## 189 Hba_00010 GO:0006862 BP
## 190 Hba_00010 GO:0006863 BP
## 191 Hba_00010 GO:0007610 BP
## 192 Hba_00010 GO:0007611 BP
## 193 Hba_00010 GO:0007613 BP
## 194 Hba_00010 GO:0007617 BP
## 195 Hba_00010 GO:0007618 BP
## 196 Hba_00010 GO:0007619 BP
## 197 Hba_00010 GO:0008049 BP
## 198 Hba_00010 GO:0008055 BP
## 199 Hba_00010 GO:0008150 BP
## 200 Hba_00010 GO:0008152 BP
## 201 Hba_00010 GO:0008509 MF
## 202 Hba_00010 GO:0008514 MF
## 203 Hba_00010 GO:0008558 MF
## 204 Hba_00010 GO:0009058 BP
## 205 Hba_00010 GO:0009308 BP
## 206 Hba_00010 GO:0009309 BP
## 207 Hba_00010 GO:0009605 BP
## 208 Hba_00010 GO:0009628 BP
## 209 Hba_00010 GO:0009629 BP
## 210 Hba_00010 GO:0009987 BP
## 211 Hba_00010 GO:0015075 MF
## 212 Hba_00010 GO:0015205 MF
## 213 Hba_00010 GO:0015208 MF
## 214 Hba_00010 GO:0015215 MF
## 215 Hba_00010 GO:0015216 MF
## 216 Hba_00010 GO:0015399 MF
## 217 Hba_00010 GO:0015605 MF
## 218 Hba_00010 GO:0015711 BP
## 219 Hba_00010 GO:0015748 BP
## 220 Hba_00010 GO:0015837 BP
## 221 Hba_00010 GO:0015842 BP
## 222 Hba_00010 GO:0015851 BP
## 223 Hba_00010 GO:0015854 BP
## 224 Hba_00010 GO:0015865 BP
## 225 Hba_00010 GO:0015868 BP
## 226 Hba_00010 GO:0015931 BP
## 227 Hba_00010 GO:0015932 MF
## 228 Hba_00010 GO:0016020 CC
## 229 Hba_00010 GO:0016462 MF
## 230 Hba_00010 GO:0016787 MF
## 231 Hba_00010 GO:0016817 MF
## 232 Hba_00010 GO:0016818 MF
## 233 Hba_00010 GO:0016887 MF
## 234 Hba_00010 GO:0017111 MF
## 235 Hba_00010 GO:0018130 BP
## 236 Hba_00010 GO:0019098 BP
## 237 Hba_00010 GO:0019438 BP
## 238 Hba_00010 GO:0019748 BP
## 239 Hba_00010 GO:0019953 BP
## 240 Hba_00010 GO:0022414 BP
## 241 Hba_00010 GO:0022804 MF
## 242 Hba_00010 GO:0022857 MF
## 243 Hba_00010 GO:0031090 CC
## 244 Hba_00010 GO:0031410 CC
## 245 Hba_00010 GO:0031982 CC
## 246 Hba_00010 GO:0032501 BP
## 247 Hba_00010 GO:0032504 BP
## 248 Hba_00010 GO:0033060 BP
## 249 Hba_00010 GO:0034220 BP
## 250 Hba_00010 GO:0034641 BP
## 251 Hba_00010 GO:0040011 BP
## 252 Hba_00010 GO:0042330 BP
## 253 Hba_00010 GO:0042332 BP
## 254 Hba_00010 GO:0042401 BP
## 255 Hba_00010 GO:0042440 BP
## 256 Hba_00010 GO:0042441 BP
## 257 Hba_00010 GO:0042626 MF
## 258 Hba_00010 GO:0043226 CC
## 259 Hba_00010 GO:0043227 CC
## 260 Hba_00010 GO:0043229 CC
## 261 Hba_00010 GO:0043324 BP
## 262 Hba_00010 GO:0043473 BP
## 263 Hba_00010 GO:0043474 BP
## 264 Hba_00010 GO:0044237 BP
## 265 Hba_00010 GO:0044249 BP
## 266 Hba_00010 GO:0044271 BP
## 267 Hba_00010 GO:0044550 BP
## 268 Hba_00010 GO:0044703 BP
## 269 Hba_00010 GO:0045117 BP
## 270 Hba_00010 GO:0046148 BP
## 271 Hba_00010 GO:0046152 BP
## 272 Hba_00010 GO:0046158 BP
## 273 Hba_00010 GO:0046483 BP
## 274 Hba_00010 GO:0048066 BP
## 275 Hba_00010 GO:0048069 BP
## 276 Hba_00010 GO:0048072 BP
## 277 Hba_00010 GO:0048609 BP
## 278 Hba_00010 GO:0048770 CC
## 279 Hba_00010 GO:0050877 BP
## 280 Hba_00010 GO:0050890 BP
## 281 Hba_00010 GO:0050896 BP
## 282 Hba_00010 GO:0051179 BP
## 283 Hba_00010 GO:0051234 BP
## 284 Hba_00010 GO:0051608 BP
## 285 Hba_00010 GO:0051615 BP
## 286 Hba_00010 GO:0051641 BP
## 287 Hba_00010 GO:0051649 BP
## 288 Hba_00010 GO:0055085 BP
## 289 Hba_00010 GO:0060179 BP
## 290 Hba_00010 GO:0065007 BP
## 291 Hba_00010 GO:0065008 BP
## 292 Hba_00010 GO:0070729 BP
## 293 Hba_00010 GO:0070731 BP
## 294 Hba_00010 GO:0071702 BP
## 295 Hba_00010 GO:0071704 BP
## 296 Hba_00010 GO:0071705 BP
## 297 Hba_00010 GO:0071944 CC
## 298 Hba_00010 GO:0072530 BP
## 299 Hba_00010 GO:0090741 CC
## 300 Hba_00010 GO:0097708 CC
## 301 Hba_00010 GO:0098588 CC
## 302 Hba_00010 GO:0098656 BP
## 303 Hba_00010 GO:0098657 BP
## 304 Hba_00010 GO:0098700 BP
## 305 Hba_00010 GO:0099504 BP
## 306 Hba_00010 GO:1901264 BP
## 307 Hba_00010 GO:1901360 BP
## 308 Hba_00010 GO:1901362 BP
## 309 Hba_00010 GO:1901505 MF
## 310 Hba_00010 GO:1901564 BP
## 311 Hba_00010 GO:1901566 BP
## 312 Hba_00010 GO:1901576 BP
## 313 Hba_00010 GO:1901679 BP
## 314 Hba_00010 GO:1903716 BP
## 315 Hba_00010 GO:1903790 BP
## 316 Hba_00010 GO:1904823 BP
## 317 Hba_00010 GO:1905948 MF
## 318 Hba_00017 GO:0003674 MF
## 319 Hba_00017 GO:0003824 MF
## 320 Hba_00017 GO:0004790 MF
## 321 Hba_00017 GO:0005575 CC
## 322 Hba_00017 GO:0005622 CC
## 323 Hba_00017 GO:0005737 CC
## 324 Hba_00017 GO:0005829 CC
## 325 Hba_00017 GO:0006139 BP
## 326 Hba_00017 GO:0006725 BP
## 327 Hba_00017 GO:0006753 BP
## 328 Hba_00017 GO:0006793 BP
## 329 Hba_00017 GO:0006796 BP
## 330 Hba_00017 GO:0006807 BP
## 331 Hba_00017 GO:0008112 MF
## 332 Hba_00017 GO:0008150 BP
## 333 Hba_00017 GO:0008152 BP
## 334 Hba_00017 GO:0008168 MF
## 335 Hba_00017 GO:0008170 MF
## 336 Hba_00017 GO:0008172 MF
## 337 Hba_00017 GO:0008757 MF
## 338 Hba_00017 GO:0009058 BP
## 339 Hba_00017 GO:0009117 BP
## 340 Hba_00017 GO:0009165 BP
## 341 Hba_00017 GO:0009308 BP
## 342 Hba_00017 GO:0009435 BP
## 343 Hba_00017 GO:0009987 BP
## 344 Hba_00017 GO:0016740 MF
## 345 Hba_00017 GO:0016741 MF
## 346 Hba_00017 GO:0018130 BP
## 347 Hba_00017 GO:0019359 BP
## 348 Hba_00017 GO:0019362 BP
## 349 Hba_00017 GO:0019363 BP
## 350 Hba_00017 GO:0019438 BP
## 351 Hba_00017 GO:0019637 BP
## 352 Hba_00017 GO:0019674 BP
## 353 Hba_00017 GO:0030748 MF
## 354 Hba_00017 GO:0030760 MF
## 355 Hba_00017 GO:0032259 BP
## 356 Hba_00017 GO:0034356 BP
## 357 Hba_00017 GO:0034641 BP
## 358 Hba_00017 GO:0034654 BP
## 359 Hba_00017 GO:0044237 BP
## 360 Hba_00017 GO:0044238 BP
## 361 Hba_00017 GO:0044249 BP
## 362 Hba_00017 GO:0044271 BP
## 363 Hba_00017 GO:0044281 BP
## 364 Hba_00017 GO:0046483 BP
## 365 Hba_00017 GO:0046496 BP
## 366 Hba_00017 GO:0055086 BP
## 367 Hba_00017 GO:0071704 BP
## 368 Hba_00017 GO:0072524 BP
## 369 Hba_00017 GO:0072525 BP
## 370 Hba_00017 GO:0090407 BP
## 371 Hba_00017 GO:0098615 MF
## 372 Hba_00017 GO:1901293 BP
## 373 Hba_00017 GO:1901360 BP
## 374 Hba_00017 GO:1901362 BP
## 375 Hba_00017 GO:1901564 BP
## 376 Hba_00017 GO:1901566 BP
## 377 Hba_00017 GO:1901576 BP
## 378 Hba_00018 <NA> <NA># Extracting GO terms for Biological Process
select(org.Hbacteriophora.eg.db,
keys = keys,
columns = c("GO", "ONTOLOGY"),
keytype = "GID") %>%
dplyr::filter(ONTOLOGY == "BP")## 'select()' returned 1:many mapping between keys and columns## GID GO ONTOLOGY
## 1 Hba_00004 GO:0035556 BP
## 2 Hba_00004 GO:0009190 BP
## 3 Hba_00009 GO:0000003 BP
## 4 Hba_00009 GO:0001408 BP
## 5 Hba_00009 GO:0001504 BP
## 6 Hba_00009 GO:0001505 BP
## 7 Hba_00009 GO:0003008 BP
## 8 Hba_00009 GO:0006576 BP
## 9 Hba_00009 GO:0006725 BP
## 10 Hba_00009 GO:0006726 BP
## 11 Hba_00009 GO:0006727 BP
## 12 Hba_00009 GO:0006807 BP
## 13 Hba_00009 GO:0006810 BP
## 14 Hba_00009 GO:0006811 BP
## 15 Hba_00009 GO:0006812 BP
## 16 Hba_00009 GO:0006820 BP
## 17 Hba_00009 GO:0006836 BP
## 18 Hba_00009 GO:0006856 BP
## 19 Hba_00009 GO:0006862 BP
## 20 Hba_00009 GO:0006863 BP
## 21 Hba_00009 GO:0007610 BP
## 22 Hba_00009 GO:0007611 BP
## 23 Hba_00009 GO:0007613 BP
## 24 Hba_00009 GO:0007617 BP
## 25 Hba_00009 GO:0007618 BP
## 26 Hba_00009 GO:0007619 BP
## 27 Hba_00009 GO:0008049 BP
## 28 Hba_00009 GO:0008055 BP
## 29 Hba_00009 GO:0008150 BP
## 30 Hba_00009 GO:0008152 BP
## 31 Hba_00009 GO:0009058 BP
## 32 Hba_00009 GO:0009308 BP
## 33 Hba_00009 GO:0009309 BP
## 34 Hba_00009 GO:0009605 BP
## 35 Hba_00009 GO:0009628 BP
## 36 Hba_00009 GO:0009629 BP
## 37 Hba_00009 GO:0009987 BP
## 38 Hba_00009 GO:0015711 BP
## 39 Hba_00009 GO:0015748 BP
## 40 Hba_00009 GO:0015837 BP
## 41 Hba_00009 GO:0015842 BP
## 42 Hba_00009 GO:0015851 BP
## 43 Hba_00009 GO:0015854 BP
## 44 Hba_00009 GO:0015865 BP
## 45 Hba_00009 GO:0015868 BP
## 46 Hba_00009 GO:0015931 BP
## 47 Hba_00009 GO:0018130 BP
## 48 Hba_00009 GO:0019098 BP
## 49 Hba_00009 GO:0019438 BP
## 50 Hba_00009 GO:0019748 BP
## 51 Hba_00009 GO:0019953 BP
## 52 Hba_00009 GO:0022414 BP
## 53 Hba_00009 GO:0032501 BP
## 54 Hba_00009 GO:0032504 BP
## 55 Hba_00009 GO:0033060 BP
## 56 Hba_00009 GO:0034220 BP
## 57 Hba_00009 GO:0034641 BP
## 58 Hba_00009 GO:0040011 BP
## 59 Hba_00009 GO:0042330 BP
## 60 Hba_00009 GO:0042332 BP
## 61 Hba_00009 GO:0042401 BP
## 62 Hba_00009 GO:0042440 BP
## 63 Hba_00009 GO:0042441 BP
## 64 Hba_00009 GO:0043324 BP
## 65 Hba_00009 GO:0043473 BP
## 66 Hba_00009 GO:0043474 BP
## 67 Hba_00009 GO:0044237 BP
## 68 Hba_00009 GO:0044249 BP
## 69 Hba_00009 GO:0044271 BP
## 70 Hba_00009 GO:0044550 BP
## 71 Hba_00009 GO:0044703 BP
## 72 Hba_00009 GO:0045117 BP
## 73 Hba_00009 GO:0046148 BP
## 74 Hba_00009 GO:0046152 BP
## 75 Hba_00009 GO:0046158 BP
## 76 Hba_00009 GO:0046483 BP
## 77 Hba_00009 GO:0048066 BP
## 78 Hba_00009 GO:0048069 BP
## 79 Hba_00009 GO:0048072 BP
## 80 Hba_00009 GO:0048609 BP
## 81 Hba_00009 GO:0050877 BP
## 82 Hba_00009 GO:0050890 BP
## 83 Hba_00009 GO:0050896 BP
## 84 Hba_00009 GO:0051179 BP
## 85 Hba_00009 GO:0051234 BP
## 86 Hba_00009 GO:0051608 BP
## 87 Hba_00009 GO:0051615 BP
## 88 Hba_00009 GO:0051641 BP
## 89 Hba_00009 GO:0051649 BP
## 90 Hba_00009 GO:0055085 BP
## 91 Hba_00009 GO:0060179 BP
## 92 Hba_00009 GO:0065007 BP
## 93 Hba_00009 GO:0065008 BP
## 94 Hba_00009 GO:0070729 BP
## 95 Hba_00009 GO:0070731 BP
## 96 Hba_00009 GO:0071702 BP
## 97 Hba_00009 GO:0071704 BP
## 98 Hba_00009 GO:0071705 BP
## 99 Hba_00009 GO:0072530 BP
## 100 Hba_00009 GO:0098656 BP
## 101 Hba_00009 GO:0098657 BP
## 102 Hba_00009 GO:0098700 BP
## 103 Hba_00009 GO:0099504 BP
## 104 Hba_00009 GO:1901264 BP
## 105 Hba_00009 GO:1901360 BP
## 106 Hba_00009 GO:1901362 BP
## 107 Hba_00009 GO:1901564 BP
## 108 Hba_00009 GO:1901566 BP
## 109 Hba_00009 GO:1901576 BP
## 110 Hba_00009 GO:1901679 BP
## 111 Hba_00009 GO:1903716 BP
## 112 Hba_00009 GO:1903790 BP
## 113 Hba_00009 GO:1904823 BP
## 114 Hba_00010 GO:0000003 BP
## 115 Hba_00010 GO:0001408 BP
## 116 Hba_00010 GO:0001504 BP
## 117 Hba_00010 GO:0001505 BP
## 118 Hba_00010 GO:0003008 BP
## 119 Hba_00010 GO:0006576 BP
## 120 Hba_00010 GO:0006725 BP
## 121 Hba_00010 GO:0006726 BP
## 122 Hba_00010 GO:0006727 BP
## 123 Hba_00010 GO:0006807 BP
## 124 Hba_00010 GO:0006810 BP
## 125 Hba_00010 GO:0006811 BP
## 126 Hba_00010 GO:0006812 BP
## 127 Hba_00010 GO:0006820 BP
## 128 Hba_00010 GO:0006836 BP
## 129 Hba_00010 GO:0006856 BP
## 130 Hba_00010 GO:0006862 BP
## 131 Hba_00010 GO:0006863 BP
## 132 Hba_00010 GO:0007610 BP
## 133 Hba_00010 GO:0007611 BP
## 134 Hba_00010 GO:0007613 BP
## 135 Hba_00010 GO:0007617 BP
## 136 Hba_00010 GO:0007618 BP
## 137 Hba_00010 GO:0007619 BP
## 138 Hba_00010 GO:0008049 BP
## 139 Hba_00010 GO:0008055 BP
## 140 Hba_00010 GO:0008150 BP
## 141 Hba_00010 GO:0008152 BP
## 142 Hba_00010 GO:0009058 BP
## 143 Hba_00010 GO:0009308 BP
## 144 Hba_00010 GO:0009309 BP
## 145 Hba_00010 GO:0009605 BP
## 146 Hba_00010 GO:0009628 BP
## 147 Hba_00010 GO:0009629 BP
## 148 Hba_00010 GO:0009987 BP
## 149 Hba_00010 GO:0015711 BP
## 150 Hba_00010 GO:0015748 BP
## 151 Hba_00010 GO:0015837 BP
## 152 Hba_00010 GO:0015842 BP
## 153 Hba_00010 GO:0015851 BP
## 154 Hba_00010 GO:0015854 BP
## 155 Hba_00010 GO:0015865 BP
## 156 Hba_00010 GO:0015868 BP
## 157 Hba_00010 GO:0015931 BP
## 158 Hba_00010 GO:0018130 BP
## 159 Hba_00010 GO:0019098 BP
## 160 Hba_00010 GO:0019438 BP
## 161 Hba_00010 GO:0019748 BP
## 162 Hba_00010 GO:0019953 BP
## 163 Hba_00010 GO:0022414 BP
## 164 Hba_00010 GO:0032501 BP
## 165 Hba_00010 GO:0032504 BP
## 166 Hba_00010 GO:0033060 BP
## 167 Hba_00010 GO:0034220 BP
## 168 Hba_00010 GO:0034641 BP
## 169 Hba_00010 GO:0040011 BP
## 170 Hba_00010 GO:0042330 BP
## 171 Hba_00010 GO:0042332 BP
## 172 Hba_00010 GO:0042401 BP
## 173 Hba_00010 GO:0042440 BP
## 174 Hba_00010 GO:0042441 BP
## 175 Hba_00010 GO:0043324 BP
## 176 Hba_00010 GO:0043473 BP
## 177 Hba_00010 GO:0043474 BP
## 178 Hba_00010 GO:0044237 BP
## 179 Hba_00010 GO:0044249 BP
## 180 Hba_00010 GO:0044271 BP
## 181 Hba_00010 GO:0044550 BP
## 182 Hba_00010 GO:0044703 BP
## 183 Hba_00010 GO:0045117 BP
## 184 Hba_00010 GO:0046148 BP
## 185 Hba_00010 GO:0046152 BP
## 186 Hba_00010 GO:0046158 BP
## 187 Hba_00010 GO:0046483 BP
## 188 Hba_00010 GO:0048066 BP
## 189 Hba_00010 GO:0048069 BP
## 190 Hba_00010 GO:0048072 BP
## 191 Hba_00010 GO:0048609 BP
## 192 Hba_00010 GO:0050877 BP
## 193 Hba_00010 GO:0050890 BP
## 194 Hba_00010 GO:0050896 BP
## 195 Hba_00010 GO:0051179 BP
## 196 Hba_00010 GO:0051234 BP
## 197 Hba_00010 GO:0051608 BP
## 198 Hba_00010 GO:0051615 BP
## 199 Hba_00010 GO:0051641 BP
## 200 Hba_00010 GO:0051649 BP
## 201 Hba_00010 GO:0055085 BP
## 202 Hba_00010 GO:0060179 BP
## 203 Hba_00010 GO:0065007 BP
## 204 Hba_00010 GO:0065008 BP
## 205 Hba_00010 GO:0070729 BP
## 206 Hba_00010 GO:0070731 BP
## 207 Hba_00010 GO:0071702 BP
## 208 Hba_00010 GO:0071704 BP
## 209 Hba_00010 GO:0071705 BP
## 210 Hba_00010 GO:0072530 BP
## 211 Hba_00010 GO:0098656 BP
## 212 Hba_00010 GO:0098657 BP
## 213 Hba_00010 GO:0098700 BP
## 214 Hba_00010 GO:0099504 BP
## 215 Hba_00010 GO:1901264 BP
## 216 Hba_00010 GO:1901360 BP
## 217 Hba_00010 GO:1901362 BP
## 218 Hba_00010 GO:1901564 BP
## 219 Hba_00010 GO:1901566 BP
## 220 Hba_00010 GO:1901576 BP
## 221 Hba_00010 GO:1901679 BP
## 222 Hba_00010 GO:1903716 BP
## 223 Hba_00010 GO:1903790 BP
## 224 Hba_00010 GO:1904823 BP
## 225 Hba_00017 GO:0006139 BP
## 226 Hba_00017 GO:0006725 BP
## 227 Hba_00017 GO:0006753 BP
## 228 Hba_00017 GO:0006793 BP
## 229 Hba_00017 GO:0006796 BP
## 230 Hba_00017 GO:0006807 BP
## 231 Hba_00017 GO:0008150 BP
## 232 Hba_00017 GO:0008152 BP
## 233 Hba_00017 GO:0009058 BP
## 234 Hba_00017 GO:0009117 BP
## 235 Hba_00017 GO:0009165 BP
## 236 Hba_00017 GO:0009308 BP
## 237 Hba_00017 GO:0009435 BP
## 238 Hba_00017 GO:0009987 BP
## 239 Hba_00017 GO:0018130 BP
## 240 Hba_00017 GO:0019359 BP
## 241 Hba_00017 GO:0019362 BP
## 242 Hba_00017 GO:0019363 BP
## 243 Hba_00017 GO:0019438 BP
## 244 Hba_00017 GO:0019637 BP
## 245 Hba_00017 GO:0019674 BP
## 246 Hba_00017 GO:0032259 BP
## 247 Hba_00017 GO:0034356 BP
## 248 Hba_00017 GO:0034641 BP
## 249 Hba_00017 GO:0034654 BP
## 250 Hba_00017 GO:0044237 BP
## 251 Hba_00017 GO:0044238 BP
## 252 Hba_00017 GO:0044249 BP
## 253 Hba_00017 GO:0044271 BP
## 254 Hba_00017 GO:0044281 BP
## 255 Hba_00017 GO:0046483 BP
## 256 Hba_00017 GO:0046496 BP
## 257 Hba_00017 GO:0055086 BP
## 258 Hba_00017 GO:0071704 BP
## 259 Hba_00017 GO:0072524 BP
## 260 Hba_00017 GO:0072525 BP
## 261 Hba_00017 GO:0090407 BP
## 262 Hba_00017 GO:1901293 BP
## 263 Hba_00017 GO:1901360 BP
## 264 Hba_00017 GO:1901362 BP
## 265 Hba_00017 GO:1901564 BP
## 266 Hba_00017 GO:1901566 BP
## 267 Hba_00017 GO:1901576 BP# Querying KEGG Pathway Information
select(org.Hbacteriophora.eg.db,
keys = keys,
columns = "KEGGPATHWAY",
keytype = "GID")## 'select()' returned 1:many mapping between keys and columns## GID KEGGPATHWAY
## 1 Hba_00001 <NA>
## 2 Hba_00004 <NA>
## 3 Hba_00009 <NA>
## 4 Hba_00010 <NA>
## 5 Hba_00017 00380
## 6 Hba_00017 00450
## 7 Hba_00017 00760
## 8 Hba_00017 01100
## 9 Hba_00017 04145
## 10 Hba_00017 04210
## 11 Hba_00017 04530
## 12 Hba_00017 04540
## 13 Hba_00018 05130
## 14 Hba_00018 04145
## 15 Hba_00018 04210
## 16 Hba_00018 04530
## 17 Hba_00018 04540sessionInfo()## R version 4.5.1 (2025-06-13)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.2 LTS
##
## Matrix products: default
## BLAS: /home/biocbuild/bbs-3.22-bioc/R/lib/libRblas.so
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0 LAPACK version 3.12.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_GB LC_COLLATE=C
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: America/New_York
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats4 stats graphics grDevices utils datasets methods
## [8] base
##
## other attached packages:
## [1] AnnotationDbi_1.71.1 IRanges_2.43.0 S4Vectors_0.47.0
## [4] Biobase_2.69.0 AnnotationHub_3.99.6 BiocFileCache_2.99.5
## [7] dbplyr_2.5.0 BiocGenerics_0.55.1 generics_0.1.4
## [10] BiocStyle_2.37.1
##
## loaded via a namespace (and not attached):
## [1] rappdirs_0.3.3 sass_0.4.10 BiocVersion_3.22.0
## [4] RSQLite_2.4.2 digest_0.6.37 magrittr_2.0.3
## [7] evaluate_1.0.4 bookdown_0.43 fastmap_1.2.0
## [10] blob_1.2.4 jsonlite_2.0.0 DBI_1.2.3
## [13] BiocManager_1.30.26 httr_1.4.7 purrr_1.1.0
## [16] Biostrings_2.77.2 httr2_1.2.1 jquerylib_0.1.4
## [19] cli_3.6.5 crayon_1.5.3 rlang_1.1.6
## [22] XVector_0.49.0 bit64_4.6.0-1 withr_3.0.2
## [25] cachem_1.1.0 yaml_2.3.10 tools_4.5.1
## [28] memoise_2.0.1 dplyr_1.1.4 filelock_1.0.3
## [31] curl_6.4.0 vctrs_0.6.5 R6_2.6.1
## [34] png_0.1-8 lifecycle_1.0.4 Seqinfo_0.99.2
## [37] KEGGREST_1.49.1 bit_4.6.0 pkgconfig_2.0.3
## [40] pillar_1.11.0 bslib_0.9.0 glue_1.8.0
## [43] xfun_0.52 tibble_3.3.0 tidyselect_1.2.1
## [46] knitr_1.50 htmltools_0.5.8.1 rmarkdown_2.29
## [49] compiler_4.5.1