## ----include = FALSE---------------------------------------------------------- knitr::opts_chunk$set( collapse = TRUE, comment = "#>" ) ## ----setup, eval=FALSE-------------------------------------------------------- # if(!requireNamespace("BiocManager", quietly = TRUE)) # install.packages("BiocManager") # BiocManager::install("MouseFM") ## ----------------------------------------------------------------------------- library(MouseFM) ## ----------------------------------------------------------------------------- avail_strains() ## ----------------------------------------------------------------------------- res = finemap(chr="chr7", strain1=c("C57BL_6J","C57L_J","CBA_J","NZB_B1NJ"), strain2=c("C3H_HEJ","MOLF_EiJ","NZW_LacJ","WSB_EiJ","SPRET_EiJ"), impact=c("HIGH", "MODERATE", "LOW")) res[1:10,] ## ----------------------------------------------------------------------------- comment(res) ## ----eval=FALSE--------------------------------------------------------------- # cons = annotate_consequences(res, "mouse") ## ----eval=FALSE--------------------------------------------------------------- # genes = annotate_mouse_genes(res, flanking = 50000) ## ----------------------------------------------------------------------------- sessionInfo()