650c9785d15abe17239bd1db8ddf4f90 *DESCRIPTION
963e528fd4fd534a4f373c97cef828c7 *NAMESPACE
90cda5a383cbaf7965ce9dc1cfbcf449 *NEWS.md
7b1dc6a4bae27e1f88f72840821a69a5 *R/clusterMotifs.R
3ac729129ee0d69a6682b0b849e1895a *R/countPwmMatches.R
8268f3b6ccbe05d57697596b0784e906 *R/data.R
280b4c014c8144c12c3e3f3350a5b750 *R/getClusterMatches.R
27f79aec9f2f1c7cf471e81c088e9c96 *R/getPwmMatches.R
080a4c821d4b2b65ba162b6fb2745996 *R/helpers.R
7d43778e2cab1bf63c19f1b7ebc54906 *R/makeRMRanges.R
ec206e980fc19b2fcafb2710b7c4a227 *R/motifTestR.R
db7a3d9e18dab2ac2bbb772752ca6057 *R/plotMatchPos.R
76422c1bb633727fcb3276b05e30191f *R/simMultiMotifs.R
b73f5fe32d02a8fdfb99010f204eeef4 *R/simSeq.R
459ac672d1397fdbbaeccd3da17c809d *R/testClusterEnrich.R
9d72d316f881ddb763afddf0b38c4fa0 *R/testClusterPos.R
d9d6e3b94a51ca628fdf1773e6495850 *R/testMotifEnrich.R
fe8e619d0aded9e5cae7fd252e83b3bd *R/testMotifPos.R
fbdd1b56ede6ff3e0fe8dd654b4f104b *build/vignette.rds
e7a2e7f37113cfd27c526041a9f3d8e1 *data/ar_er_peaks.RData
a7e8672575e0f42218fe539dc009ea01 *data/ar_er_seq.RData
1335b4d2732e7316b9f104ccfc31211f *data/ex_pfm.RData
19dba5a4e71c710e3b48ba10a2cdd5b0 *data/hg19_mask.RData
a27e96b98d5ce8c9ec10699c634e0352 *data/zr75_enh.RData
687d55eeb71583d4919c1b6779ac51f3 *inst/doc/motifAnalysis.R
5b5e8f06d24dac1a8b091a252d40436b *inst/doc/motifAnalysis.Rmd
f85162cd59a49e7709bc2abe4231e26e *inst/doc/motifAnalysis.html
21d188b575c206d2c9c790b09d0329ef *inst/figures/favicon.png
f25de67da67f2c3ef7817e7ba16ec35e *inst/references.bib
156a84d266c539f3b86d630b5ecba7a7 *inst/scripts/ar_er_peaks.R
401347b37c84a48fd229e9c8f80c9978 *inst/scripts/ex_pfm.R
ea079c1016ed4ce220b3fa3529315c69 *inst/scripts/hg19_mask.R
d93a94cd3afc80bf564f7cbfc2f069f6 *inst/scripts/zr75_enh.R
8971c7900bb60aa17c7b1a2e5da0bbb3 *man/ar_er_peaks.Rd
7ecd9fc4a09a66cdeca8a69770a5e945 *man/ar_er_seq.Rd
03820ebde7d33d5e827d88d029163463 *man/clusterMotifs.Rd
7a81e8a2960abaf5b019aa4e4a8dfb18 *man/countPwmMatches.Rd
0e5e0eef47f4b7e221e125713972fd66 *man/ex_pfm.Rd
21d188b575c206d2c9c790b09d0329ef *man/figures/favicon.png
a1335e4fb74eca441d6718c5c1de7824 *man/getClusterMatches.Rd
6f31fecf21e9f4e369d186fdc85b918d *man/getPwmMatches.Rd
d6beeaea8136834c632a7b95f2ee45f9 *man/hg19_mask.Rd
82717e764605d989d2ae162a9f472035 *man/makeRMRanges-methods.Rd
213f69be06c9568c75970b544ae8d524 *man/motifTestR-package.Rd
38643554d84a890cc9f085b041757ecb *man/plotMatchPos.Rd
8e20fd8783d645bf54b8b534084f1aa7 *man/simMultiMotifs.Rd
a16338bcfa172746ee2a9eac45dea1e2 *man/simSeq.Rd
52f4244200c5e031caa4cc5a360a9d7d *man/testClusterEnrich.Rd
3d7d94f193442c81867848137783c8b6 *man/testClusterPos.Rd
5f3b6ddf0648385e2a44ac3c561bffb0 *man/testMotifEnrich.Rd
db545917af2e6cf19a0e0b6a6fd7d796 *man/testMotifPos.Rd
f1694f45802ccfae92f0448b307728ea *man/zr75_enh.Rd
be37000ae661e8a2f4899da8c7147b19 *tests/testthat.R
54e8f8f7946d819db32bea637d52a6ee *tests/testthat/setup.R
79e34ac232d2e7e74926c4949f5b44ec *tests/testthat/test_clusterMotifs.R
7fdcc3a5f9cb79fd7a7cb76da839bba1 *tests/testthat/test_countPwmMatches.R
eb64827a6fb14172bc1dee4142d3e485 *tests/testthat/test_getClusterMatches.R
53f456b09b11385da6d516a77a32bf94 *tests/testthat/test_getPwmMatches.R
974652648e29e325c111e0f70fa55da0 *tests/testthat/test_helpers.R
e9362b4363c2d0c4e32b9c10ae4bb14f *tests/testthat/test_makeRMRanges.R
33885a18f5b32e2384549122010d8d2c *tests/testthat/test_plotMatchPos.R
7f13616e196cdc17097cdc79c4f9286d *tests/testthat/test_simMultiMotifs.R
f23d477962300fe3076e9d0598c014f0 *tests/testthat/test_simSeq.R
06ce6d0977454dd63f3eeb75c735555c *tests/testthat/test_testClusterEnrich.R
4a5e085d696a3e25fb03ff2b0355e089 *tests/testthat/test_testMotifEnrich.R
10749009899dad6016ce0024addde0f8 *tests/testthat/test_testMotifPos.R
5b5e8f06d24dac1a8b091a252d40436b *vignettes/motifAnalysis.Rmd
