31948671a58ff79e054d0544401d64d2 *DESCRIPTION
c6b240cb7455bc549479da75e0d8adc7 *NAMESPACE
6410122060f8aa9320dcd9c0c3a0f4c4 *R/MSstatsShiny.R
4c43efe3c28087b695eb34abd01e60f9 *R/dataDoc.R
8b3d835b8ea3f86ae9ac353b58b09b4b *R/launch_MSstatsShiny.R
468b9e7917ee4d79a0400c49b41b649a *R/main_calculations.R
7ba949decc3574c60ac083b2d761cd98 *R/module-expdes-server.R
de72f032f91203e19ce9451ecbd6593a *R/module-expdes-ui.R
302bd2c3e0f35c793e95c2f051bb43d9 *R/module-help-ui.R
40cdc5f5fa7caf51e4436ef1652ff12a *R/module-home-ui.R
312785c99c591c485d5a0f4df28bcc58 *R/module-loadpage-server.R
ac67f1bd2f080bf1dcb71e6bdaa8ad4f *R/module-loadpage-ui.R
5fbc886e654078becc13e8cea46fcca0 *R/module-mssstats-help-ui.R
5a34cc6fac69c2d9485b1f99857bdcf2 *R/module-qc-server.R
1bdce2913e400e7015587a95f18e5a55 *R/module-qc-ui.R
b3be2ef40f6f2ede339204bb7de880d0 *R/module-statmodel-server.R
dc9005b37fd101deee7881168565808e *R/module-statmodel-ui.R
46c3dc2e4d3ceca0882052ff861a73a0 *R/module-statstmt-help-ui.R
748b7bcb7592b448bc8c7f87e425b1fa *R/module-visualize-network-server.R
ca938fb3f9daa6186db945d650bc5c6e *R/module-visualize-network-ui.R
cf82cf5cb881e93a3ace105565b4e3fe *R/plotting_funtions.R
da5ffc23691ed4203b4d167e34039cff *R/server.R
2fda52e43b480f3885ffe4522198a36e *R/ui.R
caa7a63f47c452060349be176770c64c *R/utils.R
1da8ddc8caac95393fe5c4dc5933d090 *R/zzz.R
2546555fdc66c2f110a319f1921d4c05 *README.md
de5de8815918770f0a1f161d2fb3b7e8 *build/vignette.rds
bb0ba441c893b889da0b075f9f9194ad *data/annotation.mine.rda
4fdbcaa5840c7d028da434fad7b5a291 *data/annotation.mq.rda
a1ccdb20a86d8b8d64650b9df8af8b79 *data/annotation.pd.rda
e47c7c6982e04a9beeed8228513d41b1 *data/datalist
fe681ae45be878dd30712b042b9a795f *data/dia_skyline_model.rda
57e95888c91b2281ae0e09c88ac8236a *data/dia_skyline_summarized.rda
32eebedb80479cc4bee071749efce412 *data/evidence.rda
b7619c191b76a574187edb0a5ba82935 *data/example_dia_skyline.rda
5b6d2c8942a4bd3068e3c771c8116dfe *data/example_skyline_annotation.rda
fc57fb2c72500a47a4349c3096b15901 *data/proteinGroups.rda
4ef982fbeffc9b0377ec3162a58ef1b8 *data/raw.mine.rda
f540608254ef19799b4f5728f042177f *data/raw.om.rda
4ef9dfe3a2b0404f158f13fed8ec543e *data/raw.pd.rda
97904eee71365495faa63bfb49d51807 *data/tmt_pd_model.rda
efc92882065867da790085af2b6004a9 *data/tmt_pd_summarized.rda
9b59777a823aad0ad5b016271bad0233 *inst/NEWS.rd
eee8f4c659cb36f14fa3c2920e8bb796 *inst/assets/MSstatsLogo.PNG
9c320e39590d9ee0054231fc6e10a939 *inst/assets/style.css
8e17d9c51fa5ab59c0b7b05f4ef34b5f *inst/doc/MSstatsShiny_Launch_Instructions.R
37dfe2ab833f839abe5f2101a8537f9f *inst/doc/MSstatsShiny_Launch_Instructions.Rmd
07e81cb123046bdba5f124a26c6f95b9 *inst/doc/MSstatsShiny_Launch_Instructions.html
4d9520c56725910e726cd5d128ea835d *inst/extdata/annotation.mq.rda
486cd6fafce2a208f47b43717f92fc5e *inst/extdata/dataset.csv
06876196c5ee0ac2cad3f0eb2f809e9a *inst/extdata/evidence.rda
41b1fe162055782a66c11eb1cb7366a1 *inst/extdata/proteinGroups.rda
d0d941c896d9129193e04b16185afb94 *inst/extdata/raw.mine.csv
6f18f067eedce54e2691ce1ed7733637 *inst/extdata/templateannotation.csv
f561aaf6ef0bf14d4208bb46a4ccb3ad *inst/extdata/templateevidence.txt
d70f86fb41e98ddf8e58de925fe24d6f *inst/extdata/tutorial/annotation.csv
fc09e95325fda3a8d232cb55d8459fbb *inst/extdata/tutorial/msstats.csv
fc91e94bccc87c1c0c95ec8d952e8fa8 *man/MSstatsShiny.Rd
d06a5b895917185ad7cd09bebacc153d *man/QC_check.Rd
d7aa1cc03e6735865c151f7d67912bb3 *man/annotation.mine.Rd
d440832c46a16ec42f75a4da3f21d302 *man/annotation.mq.Rd
49941419bb143937786ef555189a56b6 *man/annotation.pd.Rd
54c68ec0c54acf005e20a0d0956a6dfd *man/apply_adj.Rd
299d26abd15d8fd13fa02246aac3602d *man/dia_skyline_model.Rd
79b50f7e0a11d8553d24319125c1169f *man/dia_skyline_summarized.Rd
6692c70e1641730c14f17d36b23b6d30 *man/evidence.Rd
8d6d60a822515eac967439c513d558fd *man/example_dia_skyline.Rd
99ae997f03e632794b6c539d04f823a5 *man/example_skyline_annotation.Rd
a6888f856f344412377406c7143e7fe5 *man/expdesServer.Rd
dd10a7c5623ea20ff76c6d093d2c3f16 *man/expdesUI.Rd
c9dd9d05b59d14f5a5123c9bf62d911e *man/figures/Step1A.png
28eccb74e2d1fdb0f7b9689bfdb22511 *man/figures/Step2A.png
00cfd85c0c46be07f22ada125cf50960 *man/figures/Step2B.png
947f002795910c03dcab1911573e70be *man/figures/Step2C.png
1f610d0dfb3a46487c69df22f450341c *man/figures/Step2D.png
d2ef47d71a403f7c7c2e2937eca70595 *man/figures/Step2E.png
f7cf060664f790974c16c012107e1122 *man/figures/Step3A.png
da73419c7395f56fad90a90e153dd841 *man/figures/Step4A.png
484aeb22f89417421499672c54aab959 *man/figures/Step4B.png
9aee0891639356fbdcf0d7a21eadad1e *man/figures/Step4C.png
9154712962cb05fbf7291cbb68082361 *man/figures/Step4D.png
9601c51bf34bddffcf2c5bad3e322d2a *man/figures/Step4E.png
d298ab223d6cc4b2b240bfd53a414c61 *man/figures/Step5A.png
cb5b8cc3233b65f3d4d2ed8226ed223c *man/figures/Step5B.png
5dc8d2d702f57a8e7ad17bd8aacfa170 *man/figures/Step6A.png
d1738d05a28a369830ee9bf87a13d453 *man/figures/Step7A.png
ba1734f1d8127e436c3196502204e835 *man/figures/Step7B.png
1d3cb3d6a011cc894d3ad28a2bcbe1b8 *man/generateCytoscapeJSForShiny.Rd
09d3eb52a1c58a3095820fdad283b401 *man/groupComparisonPlots2.Rd
1fcac903f225c14e0ea29a22c17ecc26 *man/helpUI.Rd
0f93be17edaea3e23d74c135f5fbf371 *man/homeUI.Rd
fcf1870bcdeb6c1c98de9a05bc69d201 *man/launch_MSstatsShiny.Rd
96e1e128c1857d8e8ce121b09e61cc2a *man/lf_model.Rd
28ee61b23569e5f72a5e7ca2ba493cd4 *man/lf_summarization_loop.Rd
fa195e27c8f755ea711ee606dc6aee25 *man/loadpageServer.Rd
4774d7ef5da13d4b5461648ec78db97e *man/loadpageUI.Rd
187058c8430aeab6c836681027699066 *man/msstatsHelpUI.Rd
a7f443ddac8e0b8f48ad17b4f561643a *man/msstatsTmtHelpUI.Rd
2d5b1b6a093607d4df2e9ebf69c50a67 *man/networkUI.Rd
82b8b2a8e0207e9e94e1b90fdb907231 *man/proteinGroups.Rd
5235fcc698cd1ba6275134ae97732556 *man/qcServer.Rd
c35952509681162baa293994ebf9f9ac *man/qcUI.Rd
3c253e9174329944233b549cafd0a928 *man/radioTooltip.Rd
38e93d68d910956acfa4794f0f9a90f6 *man/raw.mine.Rd
8514aed2451f5232c1bd978449c3cf9f *man/raw.om.Rd
6e2749678fc1de7c46300d2a6c98c160 *man/raw.pd.Rd
48090998ac05884534973eb81db00717 *man/server.Rd
4794f375246cc3a3a39e3db8cd4452c9 *man/statmodelServer.Rd
31fab900b555e34037245ca547b7c380 *man/statmodelUI.Rd
0155dff02c50e22029e4b443136d21ed *man/tmt_model.Rd
3964ec9c46add5d92f6259331b2101b5 *man/tmt_pd_model.Rd
48d1704c683452c9f080cf63644b1555 *man/tmt_pd_summarized.Rd
317e5e17102a34b25207c5b8c716fcb1 *man/tmt_summarization_loop.Rd
216ab1a7f3cdfb8767dddb6590df9591 *man/uiObject.Rd
27eec88b72973cbc94e37482bf490c4c *man/visualizeNetworkServer.Rd
651c742dd8e1b51f543a363fbc486c09 *man/xy_str.Rd
d75b1abfbd404666e883a4a25911ee94 *tests/testthat.R
486cd6fafce2a208f47b43717f92fc5e *tests/testthat/data/dataset.csv
7b45c74e49928319cf6c2f326573eece *tests/testthat/ex.R
c27ba9ffbf64eae94a363728c433dd89 *tests/testthat/test-module-loadpage-ui.R
075fe5fe349f632565438f2060e2f815 *tests/testthat/test-utils.R
09d00a9c15940690cadada2b33b4ddd5 *tests/testthat/test_network_visualization.R
37dfe2ab833f839abe5f2101a8537f9f *vignettes/MSstatsShiny_Launch_Instructions.Rmd
