06cc6df9b0803642981b1532d4a67ca8 *DESCRIPTION
9fc899b43dd8b8de7548ab54763d9fc5 *NAMESPACE
e5b39425cd23b5420524ff08d8d75b0a *NEWS
6375223208ca9bfd4c06a2ef31f66d3c *R/DelegatingGenomicRanges-class.R
90ffbed66128a0a034ad80995867077c *R/GNCList-class.R
908e9f55bf6b9feb77e2180d25bcc201 *R/GPos-class.R
172e2bec1be0c9523f2b3d6a6275d5d3 *R/GRanges-class.R
8a15263688e0722b94048daf738a10fe *R/GRangesFactor-class.R
b851dd1a1604fda4c89d357c9d672269 *R/GRangesList-class.R
abbd25a578d7879ca85c21bcf73adca1 *R/GenomicRanges-class.R
ac0dda84eb932377239e3ff4a5ebb260 *R/GenomicRanges-comparison.R
a379bec8bd8718566fb34d1a171a1fac *R/GenomicRangesList-class.R
a1d998c726a3868f64ae29abcb4eef10 *R/RangedData-methods.R
04dc4e64b2ab9ae41efecbe1b4cf2ade *R/absoluteRanges.R
7c787035017ff973b741997f904749cb *R/constraint.R
25d11f8d0442e051fbdd32cfad92356e *R/coverage-methods.R
2cd32e914ef29f7cb3a4ddca801e3c38 *R/findOverlaps-methods.R
dc14a22382bfc9f3fe2a4733af9bda77 *R/genomic-range-squeezers.R
75532d9e278aadb977f835ea8772f40d *R/genomicvars.R
fd17ca90b4bfee07cd21c84f93d934ea *R/inter-range-methods.R
dc5be8104b8c164d9a7e179c940d14cf *R/intra-range-methods.R
cbb4fd09518c44a6d84e0a9b7eba7cd5 *R/makeGRangesFromDataFrame.R
19a5e4c0b4f6295b442476728ae71760 *R/makeGRangesListFromDataFrame.R
37e6f6e1dc0140e62a03ce5c47ba0438 *R/nearest-methods.R
a143db88b9ee12fe5ddeb23be710cd94 *R/normarg-utils.R
86c79d66ef5738e5cf893bb700e0ed16 *R/phicoef.R
093db44f324765f1b5510d88e41fab28 *R/setops-methods.R
10c91f3b87f61c6119bbb7ad960953df *R/strand-utils.R
4ea3faa146979328f40a387b94224109 *R/subtract-methods.R
a5b3a8ac946a9c8dc75c612a4730361c *R/tile-methods.R
a760054bcf8ffcfab18abd39c8c5b63b *R/tileGenome.R
394bb8802178132447d0db8607096d67 *R/transcript-utils.R
ce31dd791777af21abc92a62b6b0117c *R/utils.R
b649e9ae274a6433b066824cb4d36ebd *R/zzz.R
e992c05d27dea049a69b46530b251279 *README.md
b7204ed93e4638eedfafc4798de9a829 *build/vignette.rds
bcb46671f9de67f4c98c54cd2fb7b0a6 *inst/CITATION
94b5b17f918fff5fb8410c826ba0a593 *inst/doc/ExtendingGenomicRanges.R
ddd793d4c363f1c08bdb5e049998796e *inst/doc/ExtendingGenomicRanges.Rnw
d8b690548234d99e5987cf304fea28cd *inst/doc/ExtendingGenomicRanges.pdf
92303e2682f777dea292c94f3bbc1ad2 *inst/doc/GRanges_and_GRangesList_slides.R
3377fbd9c5a26308da502d62c886e8cc *inst/doc/GRanges_and_GRangesList_slides.Rnw
5a39a3a902e8fdacdfd1441da87ce0c9 *inst/doc/GRanges_and_GRangesList_slides.pdf
fa6ae888fd9828851d0494bddf531f3c *inst/doc/GenomicRangesHOWTOs.R
cf54539a1fd17277bdc464860f2dd42d *inst/doc/GenomicRangesHOWTOs.Rnw
4826a8ec44bff366f5220f00e9dd32e3 *inst/doc/GenomicRangesHOWTOs.pdf
48b57167b3bdc6185674e2894f80910a *inst/doc/GenomicRangesIntroduction.R
cd77d6eda97bdfa8dca8d07822c6bea0 *inst/doc/GenomicRangesIntroduction.Rmd
511a3569b155f073cfef46fcf7b82e13 *inst/doc/GenomicRangesIntroduction.html
a99216423c77f79a79ed5b2096fa7f8d *inst/doc/Ten_things_slides.R
6e902d1034e40034e45747aa8769df48 *inst/doc/Ten_things_slides.Rnw
ef8b5d9712f11d5dd1ef7160350a3923 *inst/doc/Ten_things_slides.pdf
ffcc2b8da187a7833f24c66473b4e153 *inst/extdata/feature_frags.txt
22bba3a217f433b8fe3ade26ba60c33a *inst/scripts/timing_overlaps.R
a595eb710d972096fe1a28e78d673e9c *inst/unitTests/test_GNCList-class.R
a131d158f67f482da445c5d3a1490498 *inst/unitTests/test_GRanges-class.R
6c19329f926f9c02737aba212d3b9b2d *inst/unitTests/test_GRangesList-class.R
37b3d11399d977c95ebe3a5918042a97 *inst/unitTests/test_GenomicRanges-comparison.R
7f57006b67ef17deaedcfa41e7300585 *inst/unitTests/test_coverage-methods.R
968e130ed5e4e51a5d76f7bb9428c2be *inst/unitTests/test_findOverlaps-methods.R
70175c7aab99e8fa75bb37b66bfc5091 *inst/unitTests/test_inter-range-methods.R
6d48f9449e4dbf302efee5838e4c6a36 *inst/unitTests/test_intra-range-methods.R
e67bb491a9576ced3a4835ee3019d68f *inst/unitTests/test_makeGRangesFromDataFrame.R
f3ab173d217d739b6fe31a5eb1c2c133 *inst/unitTests/test_makeGRangesListFromDataFrame.R
3d86d2b163908a1ac6a2e5100282916b *inst/unitTests/test_nearest-methods.R
60637ee16badd34b152388d84644e3ba *inst/unitTests/test_precede_follow.R
c0d8d31b457c0497628355410a51d797 *inst/unitTests/test_setops-methods.R
ec94d6a0eec74d36df70a612a3c70626 *man/DelegatingGenomicRanges-class.Rd
6e3c2a6c65202ec19300f7b2ca05fffe *man/GNCList-class.Rd
3452c3bfdc1f6518e12b15ffcf701e4f *man/GPos-class.Rd
b89106dca98a03615166ee97e2a09120 *man/GRanges-class.Rd
e44c92186497d80b0ad7fe0cfd69da0f *man/GRangesFactor-class.Rd
09edf8a37bcfc32c8637245ea666a221 *man/GRangesList-class.Rd
4701052b83447dee2e72dd777b17cdaf *man/GenomicRanges-comparison.Rd
e0e5b7e05e3ffcc40713d4d595551bae *man/GenomicRangesList-class.Rd
ff34b1ecbaac3684ccb656a06d92b380 *man/absoluteRanges.Rd
192b7d9c1c3ce4cb553eb5337f4e1fd5 *man/constraint.Rd
b9c39a173318a613ed2198683a3cc062 *man/coverage-methods.Rd
221982924177866187f97769f55391b3 *man/findOverlaps-methods.Rd
669fb886ce9d880721bd455ca1621e65 *man/genomic-range-squeezers.Rd
19f32de7902e2f328a41013db75cf6ff *man/genomicvars.Rd
11b616fef2db860d25fc6d5aea068be6 *man/inter-range-methods.Rd
56eb179baa3d05dc5122384dd23c5482 *man/intra-range-methods.Rd
52737ab06ee74bf3a68acb3e52613592 *man/makeGRangesFromDataFrame.Rd
264721ca0166554a8b3248f81186c13a *man/makeGRangesListFromDataFrame.Rd
6317fa5e805e707e99936b70ecae7f4a *man/nearest-methods.Rd
ebb28b73ed93b90b0b6294ca99e6c22d *man/phicoef.Rd
2222be7a21d3d4633fc1c57217bfdd88 *man/setops-methods.Rd
0ed88a1fb01dcc168df8354be2e59b54 *man/strand-utils.Rd
ee2b3de43690040d62639e76213489af *man/subtract-methods.Rd
1f7dd419d000eac353f78efef2b2befd *man/tile-methods.Rd
2b5c9c89685b704c421ce6f83d9826b1 *man/tileGenome.Rd
7298910b4f3b0047aa8f8dbf5e74ae46 *src/GenomicRanges.h
b0447144238dce005a1fa8a625d1563c *src/IRanges_stubs.c
0ef8b931650118f64f3b8e9f46c08da0 *src/R_init_GenomicRanges.c
bab0b4b09cf160fa0109ae25fbb471ef *src/S4Vectors_stubs.c
fc49b05c2a842f7891a76780cb5b7a2c *src/transcript_utils.c
474f7d98652de4a66db7b6cd6e86b46a *tests/run_unitTests.R
ddd793d4c363f1c08bdb5e049998796e *vignettes/ExtendingGenomicRanges.Rnw
3377fbd9c5a26308da502d62c886e8cc *vignettes/GRanges_and_GRangesList_slides.Rnw
9149782486b45d671e5673a1d43f8bbe *vignettes/GenomicRanges.bib
cf54539a1fd17277bdc464860f2dd42d *vignettes/GenomicRangesHOWTOs.Rnw
cd77d6eda97bdfa8dca8d07822c6bea0 *vignettes/GenomicRangesIntroduction.Rmd
6e902d1034e40034e45747aa8769df48 *vignettes/Ten_things_slides.Rnw
f75b3f89df673d4de7bb283122873fef *vignettes/slides.sty
