# Generated by roxygen2: do not edit by hand

S3method(attachCellScores,Seurat)
S3method(attachCellScores,SingleCellExperiment)
S3method(attachCellScores,default)
S3method(attachCellScores,dgCMatrix)
S3method(attachCellScores,matrix)
S3method(expMat,Seurat)
S3method(expMat,SingleCellExperiment)
S3method(expMat,default)
S3method(expMat,dgCMatrix)
S3method(expMat,matrix)
export(attachCellScores)
export(basicHeatmap)
export(breakWeakTies)
export(cellDistribution)
export(cellSetsOverlaps)
export(connectedComponents)
export(expMat)
export(featureWes)
export(geneRadialPlot)
export(generateOverlaps)
export(getPairs)
export(networkPlot)
export(overlapCutoffPlot)
export(overlapGenes)
export(overlapPairs)
export(percentileSets)
export(processOverlaps)
export(qGrab)
export(runCSOA)
export(scoreCells)
export(scoreModules)
importFrom(Seurat,FeaturePlot)
importFrom(SeuratObject,Idents)
importFrom(SeuratObject,LayerData)
importFrom(SingleCellExperiment,colData)
importFrom(SummarizedExperiment,assay)
importFrom(bayesbio,jaccardSets)
importFrom(dplyr,count)
importFrom(ggeasy,easy_remove_axes)
importFrom(ggforce,geom_circle)
importFrom(ggnewscale,new_scale_color)
importFrom(ggnewscale,new_scale_fill)
importFrom(ggplot2,aes)
importFrom(ggplot2,annotate)
importFrom(ggplot2,coord_fixed)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_polygon)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,margin)
importFrom(ggplot2,scale_color_discrete)
importFrom(ggplot2,scale_color_gradientn)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_size_continuous)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,theme_void)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylim)
importFrom(ggraph,geom_edge_link)
importFrom(ggraph,geom_node_point)
importFrom(ggraph,geom_node_text)
importFrom(ggraph,ggraph)
importFrom(ggraph,scale_edge_width)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,chull)
importFrom(grDevices,dev.new)
importFrom(grDevices,dev.off)
importFrom(graphics,par)
importFrom(kerntools,minmax)
importFrom(methods,is)
importFrom(qs,qread)
importFrom(qs,qsave)
importFrom(reshape2,melt)
importFrom(sgof,BY)
importFrom(spatstat.utils,revcumsum)
importFrom(stats,phyper)
importFrom(stats,quantile)
importFrom(stats,runif)
importFrom(stats,setNames)
importFrom(textshape,cluster_matrix)
importFrom(tidygraph,as_tbl_graph)
importFrom(viridis,scale_color_viridis)
importFrom(viridis,scale_fill_viridis)
importFrom(wesanderson,wes_palette)
