62b02aa80b1383c0f944097d66a6393a *DESCRIPTION
ed8a61297e2f2d5e4f563fd7f86b5b56 *LICENSE
6b0e4e139bf2972ae1f03946ac06413a *NAMESPACE
4e6677da42eae883f3f4c4c018872476 *NEWS
909876aa5576b96413bee3c6ae571376 *R/attach_cell_scores.R
ffcb7c8930c1292dc1d0ef5426820c57 *R/compute_pair_scores.R
fedcf612974038de73b276bdaac68271 *R/extra_filter.R
5270e8b4514b6605e3335e402d51240b *R/gene_degrees.R
dd24234d091b5e62013c84f2b9efcbe8 *R/gene_modules.R
ec58a4592e33c80ef555cab87035b5f8 *R/generate_overlaps.R
0e8f45b003c1e554dabdc2d73ea098ba *R/generics.R
a616a0fbfe2b6267bc2cb28607652715 *R/geometry.R
c17df25cf628e886d98bf0a49e0be903 *R/main.R
71f70f2c68cf973f813077eea70769ee *R/percentile_sets.R
e05397c2a195f1572ed7d0214cdc74b5 *R/process_overlaps.R
bb659821e7f58f38e2dc83785fdc5a11 *R/score_cells.R
559ba541dd176a17710f1a1633d4335d *R/utils.R
e1d8f1b27815da7c33a55cfc73d93ed4 *R/visualization.R
eb97c68bdc74ade86d0c8a393857adb3 *R/visualization_aux.R
680528e333e702d4cce4fe4c8ee81d95 *README.md
eb35eea4d2cf34f4fe271fefa0960994 *build/vignette.rds
66ecfe4e24f4911d4f5c11b4b7abf8e8 *inst/doc/Advanced-CSOA.R
8a42e4a8eb43081de50c1f53e79eaaee *inst/doc/Advanced-CSOA.Rmd
e2087194d021ae831cc42059a0600d10 *inst/doc/Advanced-CSOA.html
7a37cf6917122a14f2f73884c8024edb *inst/doc/CSOA.R
24f0bdfde651eabc42a32f266b0103bd *inst/doc/CSOA.Rmd
eedff4fad5568eec9ae6b595b51d39c5 *inst/doc/CSOA.html
d3dc9b05dd5933a05b6d7bdf8c45675f *inst/doc/The-CSOA-algorithm.R
922de8a55f2712513f71f8df1ea81dc1 *inst/doc/The-CSOA-algorithm.Rmd
a928e01ed1c9283d657a5d0253b9872d *inst/doc/The-CSOA-algorithm.html
66e88b17704307af553c6eed20438c11 *man/attachCellScores.Rd
7a7c0597122923a2153e56e68aa1ef1d *man/basicHeatmap.Rd
56ee6319f2eff9d2cd6c8fe8a15e9f38 *man/borderCoords.Rd
bb89d8c5b1f2db2da00ee32b6ed0ea43 *man/breakWeakTies.Rd
7eb0b3e4abe3453cb81b343479548a9d *man/byCorrectDF.Rd
8c20c68aa48f0cafd89051479e35aea7 *man/cellDistribution.Rd
7985879c2540803477fee92eaf47a85f *man/cellSetsOverlaps.Rd
71c14d1b5694eddb911c3403ebe213d0 *man/circleCoords.Rd
a84c75cf31666f7fee27cc61fe87c388 *man/computePCPairScores.Rd
9eabce5db4fabb6cf31ab2c0a3daba62 *man/computePairScores.Rd
b99afe39f5001e37aa43145f2a6170f9 *man/connectedComponents.Rd
d58121ec4ff1478546212eb4e6ce2008 *man/edgeLists.Rd
77c85b382b37ed2a3ea15c440f8cf038 *man/expMat.Rd
af1129d4d95c0894fb3d5232427fd76a *man/featureWes.Rd
eee27ab4a3ea00ca48a131ffe0152cc7 *man/geneRadialPlot.Rd
e5cd3a775178b2b3aae65bc66e191ccb *man/generateOverlaps.Rd
ecf6cf48f46dacb3c992a7222e5c1740 *man/getPairs.Rd
afa703e4f593e52852094b2984660868 *man/networkPlot.Rd
6d814c783e404d4705a005bd13af8757 *man/networkPlotDF.Rd
1c16d3e929fa21c57199349ad56a8fad *man/overlapCutoffPlot.Rd
91c9ff630e11ee9158d110cde45cc0df *man/overlapGenes.Rd
a815b5977b87c7566d663efc584cf229 *man/overlapPairs.Rd
739aaa2fdec08568b149ba74f983fd9e *man/percentileSets.Rd
f07eb973f8e67b1026911aa34dca5969 *man/processOverlaps.Rd
c62761fac848c002eb70d0a3b7a8b031 *man/qGrab.Rd
eb06cddebae81b2c711ab7de87e62110 *man/runCSOA.Rd
0e3e98a8708d61ca7d76f11b1d39a369 *man/scoreCells.Rd
c7e05ae07586ab080afa8273c27ca847 *man/scoreCellsCore.Rd
dbc374c97b06e0908d4bbd365196ace4 *man/scoreModules.Rd
93e0d53ad21a2068930dbf1b2a6e3f7e *man/wesBinaryGradient.Rd
6644c8a70b473614e34d00e27519fda0 *tests/testthat.R
b933508fcb7c8a034d7fd41cbe1d06ec *tests/testthat/test-CSOA.R
8a42e4a8eb43081de50c1f53e79eaaee *vignettes/Advanced-CSOA.Rmd
24f0bdfde651eabc42a32f266b0103bd *vignettes/CSOA.Rmd
922de8a55f2712513f71f8df1ea81dc1 *vignettes/The-CSOA-algorithm.Rmd
