CHANGES IN VERSION 1.1.4 ----------------------- * bowtie2 version updated to 2.4.4 * Able to build large bowtie indexes (.bt21) * Able to align against large bowtie indexes (.bt2l) * Able to create bam alignment files * Use the bowtie2 and bowtie2-build wrapper scripts rather than the binaries directly CHANGES IN VERSION 1.0.0 ----------------------- INITIAL RELEASE * bowtie2 version 2.3.2 * AdapterRemoval version 2.2.1a