CHANGES IN VERSION 1.34 ----------------------- BUG FIXES o (v 1.33.1) reduceRanges() supports `files` as character vectors. CHANGES IN VERSION 1.18.0 ------------------------ NEW FEATURES o (v. 1.17.3) Add vcfFields,VcfStack-method. CHANGES IN VERSION 1.6.0 ------------------------ BUG FIXES o dimnames<- correctly updates dim names MODIFICATIONS o Defunct *FileViews classes CHANGES IN VERSION 1.4.0 ------------------------ NEW FEATURES o Add reduceFiles() and reduceRanges() o Add 'algorithm' argument to summarizeOverlaps methods o Add REDUCEsampler() from Martin MODIFICATIONS o Deprecate *FileViews classes o Modify show() for GenomicFiles class o Add 'Chunking' section to vignette o Update vignette figures o Change REDUCE default from `+` to `c` for reduceByYield() BUG FIXES o Bug fix for reduceByRange,GenomicFiles-method CHANGES IN VERSION 1.2.0 ------------------------ NEW FEATURES o Add pack / unpack generics and methods. o Add GenomicFiles class. o Add reduceByFile / reduceByRange methods for GenomicFiles class that expect 'file' to be character and 'ranges' a GRanges. o Move "yieldReduce" from Rsamtools to GenomicFiles and rename as "reduceByYield". o Allow GRange or GRangesList as @rowData in GenomicFiles class. MODIFICATIONS o Remove unused .FileList, VCFFileViews and FaFileViews class. o Add checks for 'summarize=FALSE' when REDUCER is used. o Clean up vignette introduction. o Change REDUCER() signature to single argument reguardless of the value of 'iterate'. o Rework reduceByYield() arguments for consistency with other reduceBy* functions. CHANGES IN VERSION 1.0.0 ------------------------ NEW FEATURES o First release of GenomicFiles package.