Changes in version 2.13.2 (2022-09-21) + fixed issue with tests + fixed issue with folders Changes in version 2.11.1 (2022-03-31) + replaced dependency outliers with dixonTest Changes in version 2.7.1 (2020-11-03) + fixed some warnings from R Check and BiocCheck Changes in version 2.3.1 (2020-03-18) + added helpful output in case the gradient descent diverges Changes in version 2.1.4 (2019-05-17) + minor changes Changes in version 2.1.3 (2019-05-13) + Performance improvments o regarding function calcSummary o and calcScore Changes in version 2.1.2 (2019-05-10) + New feature o y-axis in boxplot function can now be logged Changes in version 2.1.1 (2019-05-09) + New feature o Implementation of outlier detection Changes in version 2.0.0 (2019-04-30) + Code refactoring o Simplification of the source code o Changes to the API o Extraction of the preprocessing function o loss function is now exported o renaming of functions o Combination of calcPvals and calcMedians methods into one + Documentation o Update of the README o New Vignette + Serial execution of the methods is now the default + Performance improvments o Usage of RCPP for further performance improvements + Change from GPL-2 to GPL-3 license + Removing of deprecated functions + Tests o Implementation of further tests Changes in version 1.13.11 (2018-10-25) + Tests o Implementation of further tests Changes in version 1.13.10 (2018-10-24) + Tests o Test for the gdepoch function + Code refactoring o Simplification of the source code + Performance improvements Changes in version 1.13.9 (2018-10-23) + Tests o Test for the loss function + Code refactoring o Simplification of the source code Changes in version 1.13.8 (2018-10-22) + New feature o First implementation of tests with testthat + Code refactoring o Simplification of the source code Changes in version 1.13.7 (2018-10-10) + Bug fixes Changes in version 1.13.6 (2018-10-05) + Bug fixes o Some minor issues with the calculation of p-values are fixed Changes in version 1.13.5 (2018-10-04) + New feature o Checks for the validity of inputs added + Performance improvements Changes in version 1.13.4 (2018-10-02) + Performance improvements Changes in version 1.13.3 (2018-09-28) + Change of dependencies o Usage of data.table for various functions for performance improvement + Code refactoring o Simplification of the source code Changes in version 1.13.2 (2018-09-27) + Bug fixes o p-values couldn't be calculated for a gene with only missing values in a batch (#1) Changes in version 1.13.1 (2018-09-25) + Change of dependencies o BEclear uses now BiocParallel instead of snowfall for parallelisation o roxygen2 is now used for the generating the documentation + Code refactoring o Internal functions got extracted o Methods have now all their own files + Bug fixes + Performance improvements Changes in version 1.0.0 (2015-4-16) + Release with Bioconductor version 3.1 Changes in version 0.99.0 (2015-2-18) + Submitted to Bioconductor