genbankr

DOI: 10.18129/B9.bioc.genbankr  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of genbankr; for the stable release version, see genbankr.

Parsing GenBank files into semantically useful objects

Bioconductor version: Development (3.19)

Reads Genbank files.

Author: Gabriel Becker [aut, cre], Michael Lawrence [aut]

Maintainer: Gabriel Becker <becker.gabriel at gene.com>

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("genbankr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	DataImport, Infrastructure, Software
Version	1.30.0
In Bioconductor since	BioC 3.3 (R-3.3) (7.5 years)
License	Artistic-2.0
Depends	methods
Imports	BiocGenerics, IRanges(>= 2.13.15), GenomicRanges(>= 1.31.10), GenomicFeatures(>= 1.31.5), Biostrings, VariantAnnotation, rtracklayer, S4Vectors(>= 0.17.28), GenomeInfoDb, Biobase
LinkingTo
Suggests	RUnit, rentrez, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/genbankr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/genbankr
Package Short Url	https://bioconductor.org/packages/genbankr/
Package Downloads Report	Download Stats