genbankr

DOI: 10.18129/B9.bioc.genbankr  

This is the development version of genbankr; for the stable release version, see genbankr.

Parsing GenBank files into semantically useful objects

Bioconductor version: Development (3.18)

Reads Genbank files.

Author: Gabriel Becker [aut, cre], Michael Lawrence [aut]

Maintainer: Gabriel Becker <becker.gabriel at gene.com>

Citation (from within R, enter citation("genbankr")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("genbankr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DataImport, Infrastructure, Software
Version 1.29.0
In Bioconductor since BioC 3.3 (R-3.3) (7 years)
License Artistic-2.0
Depends methods
Imports BiocGenerics, IRanges(>= 2.13.15), GenomicRanges(>= 1.31.10), GenomicFeatures(>= 1.31.5), Biostrings, VariantAnnotation, rtracklayer, S4Vectors(>= 0.17.28), GenomeInfoDb, Biobase
LinkingTo
Suggests RUnit, rentrez, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/genbankr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/genbankr
Package Short Url https://bioconductor.org/packages/genbankr/
Package Downloads Report Download Stats

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