cytofast

DOI: 10.18129/B9.bioc.cytofast    

This is the development version of cytofast; to use it, please install the devel version of Bioconductor.

cytofast - A quick visualization and analysis tool for CyTOF data

Bioconductor version: Development (3.10)

Multi-parametric flow and mass cytometry allows exceptional high-resolution exploration of the cellular composition of the immune system. Together with tools like FlowSOM and Cytosplore it is possible to identify novel cell types. By introducing cytofast we hope to offer a workflow for visualization and quantification of cell clusters for an efficient discovery of cell populations associated with diseases or other clinical outcomes.

Author: K.A. Stam [aut, cre], G. Beyrend [aut]

Maintainer: K.A. Stam <k.a.stam at hotmail.com>

Citation (from within R, enter citation("cytofast")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("cytofast")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cytofast")

 

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Details

biocViews Clustering, FlowCytometry, Software, Visualization
Version 1.1.0
In Bioconductor since BioC 3.9 (R-3.6) (< 6 months)
License GPL-3
Depends R (>= 3.6.0)
Imports flowCore, ggplot2, ggridges, RColorBrewer, reshape2, stats, grDevices, Rdpack, methods, grid, FlowSOM
LinkingTo
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cytofast_1.1.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) cytofast_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/cytofast
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cytofast
Package Short Url http://bioconductor.org/packages/cytofast/
Package Downloads Report Download Stats

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