biodbMirbase

DOI: 10.18129/B9.bioc.biodbMirbase    

This is the development version of biodbMirbase; for the stable release version, see biodbMirbase.

biodbMirbase, a library for connecting to miRBase mature database

Bioconductor version: Development (3.16)

The biodbMirbase library is an extension of the biodb framework package, that provides access to miRBase mature database. It allows to retrieve entries by their accession number, and run specific web services. Description: The biodbMirbase library provides access to the miRBase Database, using biodb package framework.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Citation (from within R, enter citation("biodbMirbase")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("biodbMirbase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbMirbase")

 

HTML R Script Introduction to the biodbMirbase package.
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Infrastructure, Software
Version 1.1.0
In Bioconductor since BioC 3.15 (R-4.2) (< 6 months)
License AGPL-3
Depends R (>= 4.1)
Imports biodb(>= 1.3.1), R6, stringr, chk
LinkingTo
Suggests roxygen2, BiocStyle, testthat (>= 2.0.0), devtools, knitr, rmarkdown, covr, lgr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biodbMirbase_1.1.0.tar.gz
Windows Binary biodbMirbase_1.1.0.zip
macOS 10.13 (High Sierra) biodbMirbase_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/biodbMirbase
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biodbMirbase
Package Short Url https://bioconductor.org/packages/biodbMirbase/
Package Downloads Report Download Stats

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