SISPA

DOI: 10.18129/B9.bioc.SISPA  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of SISPA; for the stable release version, see SISPA.

SISPA: Method for Sample Integrated Set Profile Analysis

Bioconductor version: Development (3.19)

Sample Integrated Set Profile Analysis (SISPA) is a method designed to define sample groups with similar gene set enrichment profiles.

Author: Bhakti Dwivedi and Jeanne Kowalski

Maintainer: Bhakti Dwivedi <bhakti.dwivedi at emory.edu>

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SISPA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	GeneSetEnrichment, GenomeWideAssociation, Software
Version	1.32.0
In Bioconductor since	BioC 3.2 (R-3.2) (8 years)
License	GPL-2
Depends	R (>= 3.5), genefilter, GSVA, changepoint
Imports	data.table, plyr, ggplot2
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	SISPA_1.32.0.zip
macOS Binary (x86_64)	SISPA_1.32.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/SISPA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SISPA
Package Short Url	https://bioconductor.org/packages/SISPA/
Package Downloads Report	Download Stats