SISPA

DOI: 10.18129/B9.bioc.SISPA  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of SISPA; for the stable release version, see SISPA.

SISPA: Method for Sample Integrated Set Profile Analysis

Bioconductor version: Development (3.19)

Sample Integrated Set Profile Analysis (SISPA) is a method designed to define sample groups with similar gene set enrichment profiles.

Author: Bhakti Dwivedi and Jeanne Kowalski

Maintainer: Bhakti Dwivedi <bhakti.dwivedi at emory.edu>

Citation (from within R, enter citation("SISPA")):

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SISPA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews GeneSetEnrichment, GenomeWideAssociation, Software
Version 1.32.0
In Bioconductor since BioC 3.2 (R-3.2) (8 years)
License GPL-2
Depends R (>= 3.5), genefilter, GSVA, changepoint
Imports data.table, plyr, ggplot2
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary SISPA_1.32.0.zip
macOS Binary (x86_64) SISPA_1.32.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/SISPA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SISPA
Package Short Url https://bioconductor.org/packages/SISPA/
Package Downloads Report Download Stats

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