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This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This is the development version of SISPA; for the stable release version, see SISPA.
Bioconductor version: Development (3.19)
Sample Integrated Set Profile Analysis (SISPA) is a method designed to define sample groups with similar gene set enrichment profiles.
Author: Bhakti Dwivedi and Jeanne Kowalski
Maintainer: Bhakti Dwivedi <bhakti.dwivedi at emory.edu>
Citation (from within R,
enter citation("SISPA")
):
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("SISPA")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | GeneSetEnrichment, GenomeWideAssociation, Software |
Version | 1.32.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (8 years) |
License | GPL-2 |
Depends | R (>= 3.5), genefilter, GSVA, changepoint |
Imports | data.table, plyr, ggplot2 |
LinkingTo | |
Suggests | knitr |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | SISPA_1.32.0.zip |
macOS Binary (x86_64) | SISPA_1.32.0.tgz |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/SISPA |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SISPA |
Package Short Url | https://bioconductor.org/packages/SISPA/ |
Package Downloads Report | Download Stats |
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